(11 nodes) Mixed, incl. Cohesin subunit Scc3/SA, and Ca2+ pathway network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1593860	DUF4091 domain-containing protein. (651 aa)
	RCOM_1453340	Uncharacterized protein. (452 aa)
	RCOM_1564590	Cytohesin 1, 2, 3, putative. (378 aa)
	RCOM_0560040	Protein transporter, putative. (520 aa)
	RCOM_0557120	Stromal antigen, putative. (1106 aa)
	RCOM_0342700	Uncharacterized protein. (259 aa)
	RCOM_0524310	Uncharacterized protein. (175 aa)
	RCOM_0364950	Set domain protein, putative. (156 aa)
	RCOM_0547690	Uncharacterized protein. (180 aa)
	RCOM_0122590	Stromal antigen, putative. (456 aa)
	RCOM_1982530	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (79 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0122590	RCOM_0342700	B9T1M4	B9SBM4	Stromal antigen, putative.	Uncharacterized protein.	0.467
RCOM_0122590	RCOM_0557120	B9T1M4	B9S3Y7	Stromal antigen, putative.	Stromal antigen, putative.	0.542
RCOM_0342700	RCOM_0122590	B9SBM4	B9T1M4	Uncharacterized protein.	Stromal antigen, putative.	0.467
RCOM_0342700	RCOM_0364950	B9SBM4	B9STA5	Uncharacterized protein.	Set domain protein, putative.	0.483
RCOM_0342700	RCOM_0524310	B9SBM4	B9SJA4	Uncharacterized protein.	Uncharacterized protein.	0.500
RCOM_0342700	RCOM_0547690	B9SBM4	B9SX54	Uncharacterized protein.	Uncharacterized protein.	0.501
RCOM_0342700	RCOM_0560040	B9SBM4	B9S2Q1	Uncharacterized protein.	Protein transporter, putative.	0.495
RCOM_0342700	RCOM_1593860	B9SBM4	B9R7R4	Uncharacterized protein.	DUF4091 domain-containing protein.	0.526
RCOM_0364950	RCOM_0342700	B9STA5	B9SBM4	Set domain protein, putative.	Uncharacterized protein.	0.483
RCOM_0364950	RCOM_0557120	B9STA5	B9S3Y7	Set domain protein, putative.	Stromal antigen, putative.	0.455
RCOM_0364950	RCOM_1564590	B9STA5	B9RKY0	Set domain protein, putative.	Cytohesin 1, 2, 3, putative.	0.415
RCOM_0364950	RCOM_1593860	B9STA5	B9R7R4	Set domain protein, putative.	DUF4091 domain-containing protein.	0.454
RCOM_0524310	RCOM_0342700	B9SJA4	B9SBM4	Uncharacterized protein.	Uncharacterized protein.	0.500
RCOM_0524310	RCOM_0547690	B9SJA4	B9SX54	Uncharacterized protein.	Uncharacterized protein.	0.497
RCOM_0547690	RCOM_0342700	B9SX54	B9SBM4	Uncharacterized protein.	Uncharacterized protein.	0.501
RCOM_0547690	RCOM_0524310	B9SX54	B9SJA4	Uncharacterized protein.	Uncharacterized protein.	0.497
RCOM_0547690	RCOM_1593860	B9SX54	B9R7R4	Uncharacterized protein.	DUF4091 domain-containing protein.	0.447
RCOM_0557120	RCOM_0122590	B9S3Y7	B9T1M4	Stromal antigen, putative.	Stromal antigen, putative.	0.542
RCOM_0557120	RCOM_0364950	B9S3Y7	B9STA5	Stromal antigen, putative.	Set domain protein, putative.	0.455
RCOM_0560040	RCOM_0342700	B9S2Q1	B9SBM4	Protein transporter, putative.	Uncharacterized protein.	0.495