16 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1598290	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (783 aa)
	RCOM_1684240	Uncharacterized protein. (252 aa)
	RCOM_1574630	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (502 aa)
	RCOM_1077790	Trichohyalin, putative. (640 aa)
	RCOM_1353350	WD-repeat protein, putative. (950 aa)
	RCOM_1194440	Uncharacterized protein. (721 aa)
	RCOM_0690410	Dead box ATP-dependent RNA helicase, putative. (535 aa)
	RCOM_1064710	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (264 aa)
	RCOM_0585000	RNA helicase. (753 aa)
	RCOM_1321860	Sgd1p, putative. (746 aa)
	RCOM_1478350	Activator of basal transcription, putative. (406 aa)
	RCOM_0657470	rRNA-processing protein UTP23, putative. (290 aa)
	RCOM_0133970	RNA binding motif protein, putative. (181 aa)
	RCOM_0333710	Protein C14orf21, putative. (663 aa)
	RCOM_0310730	Pre-rRNA-processing protein ESF1, putative. (722 aa)
	RCOM_0398870	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (465 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0133970	RCOM_0310730	B9T1G1	B9T718	RNA binding motif protein, putative.	Pre-rRNA-processing protein ESF1, putative.	0.561
RCOM_0133970	RCOM_0333710	B9T1G1	B9T6F0	RNA binding motif protein, putative.	Protein C14orf21, putative.	0.883
RCOM_0133970	RCOM_0398870	B9T1G1	B9TA05	RNA binding motif protein, putative.	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.534
RCOM_0133970	RCOM_0585000	B9T1G1	B9SAD3	RNA binding motif protein, putative.	RNA helicase.	0.870
RCOM_0133970	RCOM_0657470	B9T1G1	B9SW27	RNA binding motif protein, putative.	rRNA-processing protein UTP23, putative.	0.653
RCOM_0133970	RCOM_0690410	B9T1G1	B9S4I3	RNA binding motif protein, putative.	Dead box ATP-dependent RNA helicase, putative.	0.716
RCOM_0133970	RCOM_1064710	B9T1G1	B9S661	RNA binding motif protein, putative.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.762
RCOM_0133970	RCOM_1077790	B9T1G1	B9RM59	RNA binding motif protein, putative.	Trichohyalin, putative.	0.730
RCOM_0133970	RCOM_1194440	B9T1G1	B9S320	RNA binding motif protein, putative.	Uncharacterized protein.	0.674
RCOM_0133970	RCOM_1321860	B9T1G1	B9SI94	RNA binding motif protein, putative.	Sgd1p, putative.	0.796
RCOM_0133970	RCOM_1353350	B9T1G1	B9S0D0	RNA binding motif protein, putative.	WD-repeat protein, putative.	0.790
RCOM_0133970	RCOM_1478350	B9T1G1	B9SJ78	RNA binding motif protein, putative.	Activator of basal transcription, putative.	0.497
RCOM_0133970	RCOM_1574630	B9T1G1	B9RHY9	RNA binding motif protein, putative.	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.778
RCOM_0133970	RCOM_1598290	B9T1G1	B9R8B1	RNA binding motif protein, putative.	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.787
RCOM_0133970	RCOM_1684240	B9T1G1	B9RC26	RNA binding motif protein, putative.	Uncharacterized protein.	0.519
RCOM_0310730	RCOM_0133970	B9T718	B9T1G1	Pre-rRNA-processing protein ESF1, putative.	RNA binding motif protein, putative.	0.561
RCOM_0310730	RCOM_0333710	B9T718	B9T6F0	Pre-rRNA-processing protein ESF1, putative.	Protein C14orf21, putative.	0.863
RCOM_0310730	RCOM_0398870	B9T718	B9TA05	Pre-rRNA-processing protein ESF1, putative.	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.918
RCOM_0310730	RCOM_0585000	B9T718	B9SAD3	Pre-rRNA-processing protein ESF1, putative.	RNA helicase.	0.997
RCOM_0310730	RCOM_0657470	B9T718	B9SW27	Pre-rRNA-processing protein ESF1, putative.	rRNA-processing protein UTP23, putative.	0.813