17 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1601210	Uncharacterized protein. (151 aa)
	RCOM_1510860	Polygalacturonase-1 non-catalytic subunit beta, putative. (637 aa)
	RCOM_1511590	Uncharacterized protein. (174 aa)
	RCOM_1611030	21 kDa protein, putative. (218 aa)
	RCOM_1578770	Uncharacterized protein. (158 aa)
	RCOM_0906020	Gnk2-homologous domain-containing protein. (119 aa)
	RCOM_0939060	DNA binding protein, putative. (109 aa)
	RCOM_1333830	Mads box protein, putative. (63 aa)
	RCOM_0860870	Uncharacterized protein. (182 aa)
	RCOM_1163400	Uncharacterized protein. (161 aa)
	RCOM_1255910	Uncharacterized protein. (89 aa)
	RCOM_0469180	Lipid binding protein, putative. (95 aa)
	RCOM_0511430	Uncharacterized protein. (195 aa)
	RCOM_0186980	Uncharacterized protein. (70 aa)
	RCOM_0397830	Lipid binding protein, putative. (95 aa)
	RCOM_0115930	Uncharacterized protein. (419 aa)
	RCOM_0170220	60S ribosomal protein L34, putative. (764 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0115930	RCOM_0170220	B9T735	B9T740	Uncharacterized protein.	60S ribosomal protein L34, putative.	0.468
RCOM_0115930	RCOM_0186980	B9T735	B9T1J8	Uncharacterized protein.	Uncharacterized protein.	0.525
RCOM_0115930	RCOM_0397830	B9T735	B9T372	Uncharacterized protein.	Lipid binding protein, putative.	0.488
RCOM_0115930	RCOM_0469180	B9T735	B9SQ13	Uncharacterized protein.	Lipid binding protein, putative.	0.473
RCOM_0115930	RCOM_0511430	B9T735	B9SSJ1	Uncharacterized protein.	Uncharacterized protein.	0.497
RCOM_0115930	RCOM_0860870	B9T735	B9SA60	Uncharacterized protein.	Uncharacterized protein.	0.513
RCOM_0115930	RCOM_0906020	B9T735	B9RXT2	Uncharacterized protein.	Gnk2-homologous domain-containing protein.	0.519
RCOM_0115930	RCOM_0939060	B9T735	B9RZG5	Uncharacterized protein.	DNA binding protein, putative.	0.533
RCOM_0115930	RCOM_1163400	B9T735	B9SD78	Uncharacterized protein.	Uncharacterized protein.	0.511
RCOM_0115930	RCOM_1255910	B9T735	B9SIF5	Uncharacterized protein.	Uncharacterized protein.	0.416
RCOM_0115930	RCOM_1333830	B9T735	B9S751	Uncharacterized protein.	Mads box protein, putative.	0.504
RCOM_0115930	RCOM_1510860	B9T735	B9RB42	Uncharacterized protein.	Polygalacturonase-1 non-catalytic subunit beta, putative.	0.493
RCOM_0115930	RCOM_1511590	B9T735	B9RB55	Uncharacterized protein.	Uncharacterized protein.	0.523
RCOM_0115930	RCOM_1578770	B9T735	B9RIG1	Uncharacterized protein.	Uncharacterized protein.	0.493
RCOM_0115930	RCOM_1601210	B9T735	B9R8P2	Uncharacterized protein.	Uncharacterized protein.	0.528
RCOM_0115930	RCOM_1611030	B9T735	B9RD89	Uncharacterized protein.	21 kDa protein, putative.	0.494
RCOM_0170220	RCOM_0115930	B9T740	B9T735	60S ribosomal protein L34, putative.	Uncharacterized protein.	0.468
RCOM_0170220	RCOM_0186980	B9T740	B9T1J8	60S ribosomal protein L34, putative.	Uncharacterized protein.	0.526
RCOM_0170220	RCOM_0397830	B9T740	B9T372	60S ribosomal protein L34, putative.	Lipid binding protein, putative.	0.455
RCOM_0170220	RCOM_0469180	B9T740	B9SQ13	60S ribosomal protein L34, putative.	Lipid binding protein, putative.	0.471