95 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1596660	Uncharacterized protein. (339 aa)
	RCOM_1503100	Uncharacterized protein. (160 aa)
	RCOM_1503110	Uncharacterized protein. (161 aa)
	RCOM_1508690	Uncharacterized protein. (158 aa)
	RCOM_1673500	Uncharacterized protein. (94 aa)
	RCOM_1615090	Uncharacterized protein. (246 aa)
	RCOM_1615140	Uncharacterized protein. (175 aa)
	RCOM_1434110	F-box domain-containing protein. (288 aa)
	RCOM_1436590	Serine/threonine-protein kinase Haspin, putative. (649 aa)
	RCOM_1438500	Uncharacterized protein. (139 aa)
	RCOM_1445240	PGG domain-containing protein. (155 aa)
	RCOM_1447040	Uncharacterized protein. (165 aa)
	RCOM_1764730	8.4 kDa sulfur-rich protein, putative; Belongs to the DEFL family. (74 aa)
	RCOM_1580600	Uncharacterized protein. (61 aa)
	RCOM_1030650	Low-molecular-weight cysteine-rich protein LCR69, putative; Belongs to the DEFL family. (77 aa)
	RCOM_1031060	F-box domain-containing protein. (301 aa)
	RCOM_1039130	Uncharacterized protein. (243 aa)
	RCOM_1048260	Uncharacterized protein. (197 aa)
	RCOM_1048850	NAC domain-containing protein. (460 aa)
	RCOM_1053260	Uncharacterized protein. (65 aa)
	RCOM_1077730	Uncharacterized protein. (263 aa)
	RCOM_1540860	ATPase inhibitor, putative. (88 aa)
	RCOM_0908970	Uncharacterized protein. (143 aa)
	RCOM_0908980	Zeta_toxin domain-containing protein. (361 aa)
	RCOM_1631420	WAT1-related protein. (372 aa)
	RCOM_0896900	Signal transducer, putative; Belongs to the NPH3 family. (428 aa)
	RCOM_0900600	Uncharacterized protein. (285 aa)
	RCOM_0962850	Uncharacterized protein. (85 aa)
	RCOM_1173000	Uncharacterized protein. (99 aa)
	RCOM_1176550	Uncharacterized protein. (88 aa)
	RCOM_1176950	ATP binding protein, putative. (417 aa)
	RCOM_1018600	Uncharacterized protein. (518 aa)
	RCOM_0818110	Uncharacterized protein. (369 aa)
	RCOM_0812860	Uncharacterized protein. (86 aa)
	RCOM_1314010	PHD domain-containing protein. (868 aa)
	RCOM_1314020	Uncharacterized protein. (297 aa)
	RCOM_0999580	Uncharacterized protein. (215 aa)
	RCOM_1353680	Uncharacterized protein. (129 aa)
	RCOM_1324440	ATP binding protein, putative. (1279 aa)
	RCOM_0555430	Uncharacterized protein. (82 aa)
	RCOM_0557230	Late embryogenesis abundant protein D-34, putative. (257 aa)
	RCOM_0990950	Uncharacterized protein. (202 aa)
	RCOM_0992710	Zeta_toxin domain-containing protein. (509 aa)
	RCOM_1392950	Uncharacterized protein. (70 aa)
	RCOM_1719380	Uncharacterized protein. (630 aa)
	RCOM_1381500	Uncharacterized protein. (163 aa)
	RCOM_0603660	Uncharacterized protein. (178 aa)
	RCOM_0886190	Uncharacterized protein. (101 aa)
	RCOM_0886460	Uncharacterized protein. (121 aa)
	RCOM_0886580	Uncharacterized protein. (132 aa)
	RCOM_0886630	Uncharacterized protein. (120 aa)
	RCOM_1178370	Uncharacterized protein. (259 aa)
	RCOM_0783770	C2H2-type domain-containing protein. (211 aa)
	RCOM_1409730	Uncharacterized protein. (271 aa)
	RCOM_0472650	Uncharacterized protein. (213 aa)
	RCOM_0474400	Shugoshin-1, putative. (302 aa)
	RCOM_1515360	Uncharacterized protein. (51 aa)
	RCOM_1291040	Uncharacterized protein. (178 aa)
	RCOM_0723160	Uncharacterized protein. (141 aa)
	RCOM_0552890	Uncharacterized protein. (129 aa)
	RCOM_0819840	Uncharacterized protein. (99 aa)
	RCOM_1119070	Uncharacterized protein. (617 aa)
	RCOM_0621350	WAT1-related protein. (415 aa)
	RCOM_0622470	Ubiquitin-protein ligase, putative. (392 aa)
	RCOM_1321200	Uncharacterized protein. (122 aa)
	RCOM_1255460	Uncharacterized protein. (100 aa)
	RCOM_1255470	Uncharacterized protein. (98 aa)
	RCOM_1255580	Uncharacterized protein. (119 aa)
	RCOM_1398810	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family. (284 aa)
	RCOM_0847590	Uncharacterized protein. (107 aa)
	RCOM_0532150	DUF4220 domain-containing protein. (699 aa)
	RCOM_1310530	Uncharacterized protein. (62 aa)
	RCOM_0297040	Uncharacterized protein. (193 aa)
	RCOM_1628360	Chitinase, putative. (315 aa)
	RCOM_0024120	Uncharacterized protein. (369 aa)
	RCOM_0738940	Uncharacterized protein. (70 aa)
	RCOM_1060190	C2H2-type domain-containing protein. (109 aa)
	RCOM_1374940	Uncharacterized protein. (64 aa)
	RCOM_0353120	Uncharacterized protein. (91 aa)
	RCOM_1319770	F-box domain-containing protein. (272 aa)
	RCOM_0721960	Uncharacterized protein. (208 aa)
	RCOM_0713200	Uncharacterized protein. (182 aa)
	RCOM_0303940	Uncharacterized protein. (725 aa)
	RCOM_0068030	Uncharacterized protein; Belongs to the complex I LYR family. (81 aa)
	RCOM_0065810	Uncharacterized protein. (206 aa)
	RCOM_0462760	Uncharacterized protein. (95 aa)
	RCOM_0445500	Uncharacterized protein. (189 aa)
	RCOM_0463730	Uncharacterized protein. (160 aa)
	RCOM_0149340	Uncharacterized protein. (101 aa)
	RCOM_0149710	Uncharacterized protein. (75 aa)
	RCOM_1170580	Uncharacterized protein. (78 aa)
	RCOM_0662400	Uncharacterized protein. (749 aa)
	RCOM_0288850	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (98 aa)
	RCOM_1197770	Uncharacterized protein. (213 aa)
	RCOM_0367420	Uncharacterized protein. (117 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0024120	RCOM_0557230	B9SPI5	B9S3Z6	Uncharacterized protein.	Late embryogenesis abundant protein D-34, putative.	0.443
RCOM_0024120	RCOM_1018600	B9SPI5	B9RWE5	Uncharacterized protein.	Uncharacterized protein.	0.491
RCOM_0024120	RCOM_1031060	B9SPI5	B9RJ45	Uncharacterized protein.	F-box domain-containing protein.	0.449
RCOM_0024120	RCOM_1398810	B9SPI5	B9SK16	Uncharacterized protein.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.468
RCOM_0065810	RCOM_0149340	B9SZK1	B9T331	Uncharacterized protein.	Uncharacterized protein.	0.522
RCOM_0065810	RCOM_0297040	B9SZK1	B9SM88	Uncharacterized protein.	Uncharacterized protein.	0.469
RCOM_0065810	RCOM_0303940	B9SZK1	B9SX38	Uncharacterized protein.	Uncharacterized protein.	0.493
RCOM_0065810	RCOM_0353120	B9SZK1	B9ST06	Uncharacterized protein.	Uncharacterized protein.	0.432
RCOM_0065810	RCOM_0367420	B9SZK1	B9T785	Uncharacterized protein.	Uncharacterized protein.	0.533
RCOM_0065810	RCOM_0445500	B9SZK1	B9T1S5	Uncharacterized protein.	Uncharacterized protein.	0.536
RCOM_0065810	RCOM_0474400	B9SZK1	B9SCJ5	Uncharacterized protein.	Shugoshin-1, putative.	0.408
RCOM_0065810	RCOM_0552890	B9SZK1	B9SGH2	Uncharacterized protein.	Uncharacterized protein.	0.427
RCOM_0065810	RCOM_0603660	B9SZK1	B9S8Q8	Uncharacterized protein.	Uncharacterized protein.	0.407
RCOM_0065810	RCOM_0621350	B9SZK1	B9SHS8	Uncharacterized protein.	WAT1-related protein.	0.452
RCOM_0065810	RCOM_0723160	B9SZK1	B9SFT9	Uncharacterized protein.	Uncharacterized protein.	0.537
RCOM_0065810	RCOM_0738940	B9SZK1	B9SQJ6	Uncharacterized protein.	Uncharacterized protein.	0.539
RCOM_0065810	RCOM_0783770	B9SZK1	B9SB40	Uncharacterized protein.	C2H2-type domain-containing protein.	0.477
RCOM_0065810	RCOM_0812860	B9SZK1	B9RYG2	Uncharacterized protein.	Uncharacterized protein.	0.539
RCOM_0065810	RCOM_0886190	B9SZK1	B9S9J1	Uncharacterized protein.	Uncharacterized protein.	0.533
RCOM_0065810	RCOM_0886580	B9SZK1	B9S9L0	Uncharacterized protein.	Uncharacterized protein.	0.521