11 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1503100	Uncharacterized protein. (160 aa)
	RCOM_1508690	Uncharacterized protein. (158 aa)
	RCOM_1673500	Uncharacterized protein. (94 aa)
	RCOM_0812860	Uncharacterized protein. (86 aa)
	RCOM_0886630	Uncharacterized protein. (120 aa)
	RCOM_1291040	Uncharacterized protein. (178 aa)
	RCOM_0723160	Uncharacterized protein. (141 aa)
	RCOM_1255580	Uncharacterized protein. (119 aa)
	RCOM_0065810	Uncharacterized protein. (206 aa)
	RCOM_0445500	Uncharacterized protein. (189 aa)
	RCOM_1170580	Uncharacterized protein. (78 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0065810	RCOM_0445500	B9SZK1	B9T1S5	Uncharacterized protein.	Uncharacterized protein.	0.536
RCOM_0065810	RCOM_0723160	B9SZK1	B9SFT9	Uncharacterized protein.	Uncharacterized protein.	0.537
RCOM_0065810	RCOM_0812860	B9SZK1	B9RYG2	Uncharacterized protein.	Uncharacterized protein.	0.539
RCOM_0065810	RCOM_0886630	B9SZK1	B9S9L5	Uncharacterized protein.	Uncharacterized protein.	0.527
RCOM_0065810	RCOM_1170580	B9SZK1	B9T447	Uncharacterized protein.	Uncharacterized protein.	0.501
RCOM_0065810	RCOM_1255580	B9SZK1	B9SIF2	Uncharacterized protein.	Uncharacterized protein.	0.538
RCOM_0065810	RCOM_1291040	B9SZK1	B9SDS8	Uncharacterized protein.	Uncharacterized protein.	0.526
RCOM_0065810	RCOM_1503100	B9SZK1	B9RA43	Uncharacterized protein.	Uncharacterized protein.	0.495
RCOM_0065810	RCOM_1508690	B9SZK1	B9RAU6	Uncharacterized protein.	Uncharacterized protein.	0.498
RCOM_0065810	RCOM_1673500	B9SZK1	B9RBA2	Uncharacterized protein.	Uncharacterized protein.	0.487
RCOM_0445500	RCOM_0065810	B9T1S5	B9SZK1	Uncharacterized protein.	Uncharacterized protein.	0.536
RCOM_0445500	RCOM_0723160	B9T1S5	B9SFT9	Uncharacterized protein.	Uncharacterized protein.	0.528
RCOM_0445500	RCOM_0812860	B9T1S5	B9RYG2	Uncharacterized protein.	Uncharacterized protein.	0.534
RCOM_0445500	RCOM_0886630	B9T1S5	B9S9L5	Uncharacterized protein.	Uncharacterized protein.	0.531
RCOM_0445500	RCOM_1170580	B9T1S5	B9T447	Uncharacterized protein.	Uncharacterized protein.	0.506
RCOM_0445500	RCOM_1255580	B9T1S5	B9SIF2	Uncharacterized protein.	Uncharacterized protein.	0.539
RCOM_0445500	RCOM_1291040	B9T1S5	B9SDS8	Uncharacterized protein.	Uncharacterized protein.	0.513
RCOM_0445500	RCOM_1503100	B9T1S5	B9RA43	Uncharacterized protein.	Uncharacterized protein.	0.536
RCOM_0445500	RCOM_1508690	B9T1S5	B9RAU6	Uncharacterized protein.	Uncharacterized protein.	0.535
RCOM_0445500	RCOM_1673500	B9T1S5	B9RBA2	Uncharacterized protein.	Uncharacterized protein.	0.517