(6 nodes) Mixed, incl. Protein LONGIFOLIA 1/2, and RING-H2 finger protein ATL20-22-like network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1591260	Uncharacterized protein. (228 aa)
	RCOM_1579710	Ubiquitin-protein ligase, putative. (239 aa)
	RCOM_1580580	Uncharacterized protein. (638 aa)
	RCOM_1489420	Uncharacterized protein. (523 aa)
	RCOM_0968100	Uncharacterized protein. (847 aa)
	RCOM_1027070	Uncharacterized protein. (1047 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0968100	RCOM_1027070	B9RVP9	B9SNR4	Uncharacterized protein.	Uncharacterized protein.	0.459
RCOM_0968100	RCOM_1489420	B9RVP9	B9RQE3	Uncharacterized protein.	Uncharacterized protein.	0.475
RCOM_0968100	RCOM_1579710	B9RVP9	B9RIJ5	Uncharacterized protein.	Ubiquitin-protein ligase, putative.	0.500
RCOM_0968100	RCOM_1580580	B9RVP9	B9RIM2	Uncharacterized protein.	Uncharacterized protein.	0.477
RCOM_0968100	RCOM_1591260	B9RVP9	B9R7F5	Uncharacterized protein.	Uncharacterized protein.	0.516
RCOM_1027070	RCOM_0968100	B9SNR4	B9RVP9	Uncharacterized protein.	Uncharacterized protein.	0.459
RCOM_1027070	RCOM_1489420	B9SNR4	B9RQE3	Uncharacterized protein.	Uncharacterized protein.	0.525
RCOM_1027070	RCOM_1580580	B9SNR4	B9RIM2	Uncharacterized protein.	Uncharacterized protein.	0.435
RCOM_1489420	RCOM_0968100	B9RQE3	B9RVP9	Uncharacterized protein.	Uncharacterized protein.	0.475
RCOM_1489420	RCOM_1027070	B9RQE3	B9SNR4	Uncharacterized protein.	Uncharacterized protein.	0.525
RCOM_1489420	RCOM_1579710	B9RQE3	B9RIJ5	Uncharacterized protein.	Ubiquitin-protein ligase, putative.	0.504
RCOM_1489420	RCOM_1580580	B9RQE3	B9RIM2	Uncharacterized protein.	Uncharacterized protein.	0.486
RCOM_1489420	RCOM_1591260	B9RQE3	B9R7F5	Uncharacterized protein.	Uncharacterized protein.	0.447
RCOM_1579710	RCOM_0968100	B9RIJ5	B9RVP9	Ubiquitin-protein ligase, putative.	Uncharacterized protein.	0.500
RCOM_1579710	RCOM_1489420	B9RIJ5	B9RQE3	Ubiquitin-protein ligase, putative.	Uncharacterized protein.	0.504
RCOM_1579710	RCOM_1580580	B9RIJ5	B9RIM2	Ubiquitin-protein ligase, putative.	Uncharacterized protein.	0.462
RCOM_1579710	RCOM_1591260	B9RIJ5	B9R7F5	Ubiquitin-protein ligase, putative.	Uncharacterized protein.	0.505
RCOM_1580580	RCOM_0968100	B9RIM2	B9RVP9	Uncharacterized protein.	Uncharacterized protein.	0.477
RCOM_1580580	RCOM_1027070	B9RIM2	B9SNR4	Uncharacterized protein.	Uncharacterized protein.	0.435
RCOM_1580580	RCOM_1489420	B9RIM2	B9RQE3	Uncharacterized protein.	Uncharacterized protein.	0.486