11 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1728180	Uncharacterized protein. (742 aa)
	RCOM_0909010	Uncharacterized protein. (773 aa)
	RCOM_0719440	PORR domain-containing protein. (562 aa)
	RCOM_0647750	Uncharacterized protein. (524 aa)
	RCOM_0529220	Uncharacterized protein. (561 aa)
	RCOM_0621490	Galactoside 2-alpha-L-fucosyltransferase, putative. (351 aa)
	RCOM_0623480	APO protein 2, chloroplast, putative. (616 aa)
	RCOM_1158840	Uncharacterized protein. (745 aa)
	RCOM_0396310	RNA binding protein, putative. (532 aa)
	RCOM_0310220	PMR5N domain-containing protein. (566 aa)
	RCOM_2121360	Uncharacterized protein. (748 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0310220	RCOM_0621490	B9T867	B9SHU2	PMR5N domain-containing protein.	Galactoside 2-alpha-L-fucosyltransferase, putative.	0.422
RCOM_0310220	RCOM_0623480	B9T867	B9STR9	PMR5N domain-containing protein.	APO protein 2, chloroplast, putative.	0.429
RCOM_0310220	RCOM_0909010	B9T867	B9RTE8	PMR5N domain-containing protein.	Uncharacterized protein.	0.423
RCOM_0310220	RCOM_1158840	B9T867	B9T1N5	PMR5N domain-containing protein.	Uncharacterized protein.	0.496
RCOM_0396310	RCOM_0529220	B9T4J0	B9SHC6	RNA binding protein, putative.	Uncharacterized protein.	0.626
RCOM_0396310	RCOM_0623480	B9T4J0	B9STR9	RNA binding protein, putative.	APO protein 2, chloroplast, putative.	0.664
RCOM_0396310	RCOM_0647750	B9T4J0	B9SFM8	RNA binding protein, putative.	Uncharacterized protein.	0.493
RCOM_0396310	RCOM_0719440	B9T4J0	B9SBK3	RNA binding protein, putative.	PORR domain-containing protein.	0.799
RCOM_0396310	RCOM_0909010	B9T4J0	B9RTE8	RNA binding protein, putative.	Uncharacterized protein.	0.739
RCOM_0396310	RCOM_1158840	B9T4J0	B9T1N5	RNA binding protein, putative.	Uncharacterized protein.	0.437
RCOM_0396310	RCOM_1728180	B9T4J0	B9RSN8	RNA binding protein, putative.	Uncharacterized protein.	0.615
RCOM_0396310	RCOM_2121360	B9T4J0	B9TA40	RNA binding protein, putative.	Uncharacterized protein.	0.697
RCOM_0529220	RCOM_0396310	B9SHC6	B9T4J0	Uncharacterized protein.	RNA binding protein, putative.	0.626
RCOM_0529220	RCOM_0623480	B9SHC6	B9STR9	Uncharacterized protein.	APO protein 2, chloroplast, putative.	0.594
RCOM_0529220	RCOM_0647750	B9SHC6	B9SFM8	Uncharacterized protein.	Uncharacterized protein.	0.593
RCOM_0529220	RCOM_0719440	B9SHC6	B9SBK3	Uncharacterized protein.	PORR domain-containing protein.	0.681
RCOM_0529220	RCOM_0909010	B9SHC6	B9RTE8	Uncharacterized protein.	Uncharacterized protein.	0.612
RCOM_0529220	RCOM_1728180	B9SHC6	B9RSN8	Uncharacterized protein.	Uncharacterized protein.	0.679
RCOM_0621490	RCOM_0310220	B9SHU2	B9T867	Galactoside 2-alpha-L-fucosyltransferase, putative.	PMR5N domain-containing protein.	0.422
RCOM_0621490	RCOM_0623480	B9SHU2	B9STR9	Galactoside 2-alpha-L-fucosyltransferase, putative.	APO protein 2, chloroplast, putative.	0.487