16 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1593400	IPPc domain-containing protein. (341 aa)
	RCOM_1767350	Uncharacterized protein. (168 aa)
	RCOM_0709300	Indole-3-acetic acid-induced protein ARG7, putative. (161 aa)
	RCOM_0851890	Uncharacterized protein. (68 aa)
	RCOM_0937400	Uncharacterized protein. (126 aa)
	RCOM_1001420	FK506-binding protein, putative. (321 aa)
	RCOM_0992060	Triacylglycerol lipase, putative. (440 aa)
	RCOM_0474880	BHLH domain-containing protein. (162 aa)
	RCOM_0474890	Uncharacterized protein. (156 aa)
	RCOM_1213150	Uncharacterized protein. (586 aa)
	RCOM_1091030	Uncharacterized protein. (159 aa)
	RCOM_1206800	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (181 aa)
	RCOM_0071670	DNA binding protein, putative. (257 aa)
	RCOM_0071880	DNA binding protein, putative. (184 aa)
	RCOM_0326730	Uncharacterized protein. (127 aa)
	RCOM_0326740	Uncharacterized protein. (162 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0071670	RCOM_0326730	B9SZX1	B9T318	DNA binding protein, putative.	Uncharacterized protein.	0.449
RCOM_0071670	RCOM_0326740	B9SZX1	B9T319	DNA binding protein, putative.	Uncharacterized protein.	0.468
RCOM_0071670	RCOM_0474880	B9SZX1	B9SCK3	DNA binding protein, putative.	BHLH domain-containing protein.	0.598
RCOM_0071670	RCOM_0474890	B9SZX1	B9SCK4	DNA binding protein, putative.	Uncharacterized protein.	0.573
RCOM_0071670	RCOM_1091030	B9SZX1	B9SKT1	DNA binding protein, putative.	Uncharacterized protein.	0.467
RCOM_0071670	RCOM_1206800	B9SZX1	B9SXY9	DNA binding protein, putative.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.484
RCOM_0071880	RCOM_0326730	B9SZX2	B9T318	DNA binding protein, putative.	Uncharacterized protein.	0.431
RCOM_0071880	RCOM_0326740	B9SZX2	B9T319	DNA binding protein, putative.	Uncharacterized protein.	0.471
RCOM_0071880	RCOM_0474880	B9SZX2	B9SCK3	DNA binding protein, putative.	BHLH domain-containing protein.	0.536
RCOM_0071880	RCOM_0474890	B9SZX2	B9SCK4	DNA binding protein, putative.	Uncharacterized protein.	0.561
RCOM_0071880	RCOM_1091030	B9SZX2	B9SKT1	DNA binding protein, putative.	Uncharacterized protein.	0.472
RCOM_0071880	RCOM_1206800	B9SZX2	B9SXY9	DNA binding protein, putative.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.501
RCOM_0071880	RCOM_1593400	B9SZX2	B9R7N8	DNA binding protein, putative.	IPPc domain-containing protein.	0.481
RCOM_0326730	RCOM_0071670	B9T318	B9SZX1	Uncharacterized protein.	DNA binding protein, putative.	0.449
RCOM_0326730	RCOM_0071880	B9T318	B9SZX2	Uncharacterized protein.	DNA binding protein, putative.	0.431
RCOM_0326730	RCOM_0937400	B9T318	B9RZB2	Uncharacterized protein.	Uncharacterized protein.	0.475
RCOM_0326730	RCOM_1001420	B9T318	B9RZU4	Uncharacterized protein.	FK506-binding protein, putative.	0.438
RCOM_0326740	RCOM_0071670	B9T319	B9SZX1	Uncharacterized protein.	DNA binding protein, putative.	0.468
RCOM_0326740	RCOM_0071880	B9T319	B9SZX2	Uncharacterized protein.	DNA binding protein, putative.	0.471
RCOM_0326740	RCOM_0937400	B9T319	B9RZB2	Uncharacterized protein.	Uncharacterized protein.	0.442