21 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1595670	Ubiquitin-protein ligase, putative. (439 aa)
	RCOM_1510570	Uncharacterized protein. (286 aa)
	RCOM_1675250	Uncharacterized protein. (643 aa)
	RCOM_1690030	Uncharacterized protein. (301 aa)
	RCOM_1691040	Uncharacterized protein. (109 aa)
	RCOM_1430830	Ring finger protein, putative. (380 aa)
	RCOM_1573700	Uncharacterized protein. (434 aa)
	RCOM_1577780	Uncharacterized protein. (527 aa)
	RCOM_0799850	Uncharacterized protein. (949 aa)
	RCOM_0852650	Uncharacterized protein. (1009 aa)
	RCOM_1020320	PMP, putative. (369 aa)
	RCOM_0866790	PORR domain-containing protein. (447 aa)
	RCOM_0774040	Pentatricopeptide repeat-containing protein, putative. (835 aa)
	RCOM_0528120	Uncharacterized protein. (270 aa)
	RCOM_0466820	Uncharacterized protein. (180 aa)
	RCOM_0684470	Uncharacterized protein. (224 aa)
	RCOM_0684480	Uncharacterized protein. (868 aa)
	RCOM_0259050	Uncharacterized protein. (134 aa)
	RCOM_0504250	WRC domain-containing protein. (360 aa)
	RCOM_0211390	RAP domain-containing protein. (666 aa)
	RCOM_0215070	Uncharacterized protein. (555 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0211390	RCOM_0215070	B9T527	B9T648	RAP domain-containing protein.	Uncharacterized protein.	0.473
RCOM_0211390	RCOM_0259050	B9T527	B9SV15	RAP domain-containing protein.	Uncharacterized protein.	0.500
RCOM_0211390	RCOM_0466820	B9T527	B9SPY7	RAP domain-containing protein.	Uncharacterized protein.	0.499
RCOM_0211390	RCOM_0684480	B9T527	B9ST62	RAP domain-containing protein.	Uncharacterized protein.	0.466
RCOM_0211390	RCOM_0774040	B9T527	B9S769	RAP domain-containing protein.	Pentatricopeptide repeat-containing protein, putative.	0.528
RCOM_0211390	RCOM_0799850	B9T527	B9RRY6	RAP domain-containing protein.	Uncharacterized protein.	0.453
RCOM_0211390	RCOM_0852650	B9T527	B9RUG2	RAP domain-containing protein.	Uncharacterized protein.	0.446
RCOM_0211390	RCOM_0866790	B9T527	B9S1N9	RAP domain-containing protein.	PORR domain-containing protein.	0.495
RCOM_0211390	RCOM_1020320	B9T527	B9RWJ6	RAP domain-containing protein.	PMP, putative.	0.458
RCOM_0211390	RCOM_1430830	B9T527	B9RF24	RAP domain-containing protein.	Ring finger protein, putative.	0.438
RCOM_0211390	RCOM_1510570	B9T527	B9RB23	RAP domain-containing protein.	Uncharacterized protein.	0.466
RCOM_0211390	RCOM_1573700	B9T527	B9RHU6	RAP domain-containing protein.	Uncharacterized protein.	0.467
RCOM_0211390	RCOM_1577780	B9T527	B9RIC3	RAP domain-containing protein.	Uncharacterized protein.	0.443
RCOM_0211390	RCOM_1595670	B9T527	B9R7Z4	RAP domain-containing protein.	Ubiquitin-protein ligase, putative.	0.416
RCOM_0211390	RCOM_1675250	B9T527	B9RBF4	RAP domain-containing protein.	Uncharacterized protein.	0.506
RCOM_0211390	RCOM_1691040	B9T527	B9RCN9	RAP domain-containing protein.	Uncharacterized protein.	0.514
RCOM_0215070	RCOM_0211390	B9T648	B9T527	Uncharacterized protein.	RAP domain-containing protein.	0.473
RCOM_0215070	RCOM_0259050	B9T648	B9SV15	Uncharacterized protein.	Uncharacterized protein.	0.407
RCOM_0215070	RCOM_0466820	B9T648	B9SPY7	Uncharacterized protein.	Uncharacterized protein.	0.478
RCOM_0215070	RCOM_0504250	B9T648	B9SXK3	Uncharacterized protein.	WRC domain-containing protein.	0.497