12 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1513170	Epstein-Barr nuclear antigen, putative. (561 aa)
	RCOM_1617910	WD-repeat protein, putative. (517 aa)
	RCOM_1434570	Uncharacterized protein. (851 aa)
	RCOM_1137830	Pre-mRNA-processing protein PRP40, putative. (886 aa)
	RCOM_0708800	Red protein, putative. (567 aa)
	RCOM_0999650	Uncharacterized protein. (847 aa)
	RCOM_1355790	Ubiquitin-like domain-containing protein. (73 aa)
	RCOM_0774560	Nucleic acid binding protein, putative. (250 aa)
	RCOM_1321190	Microfibril-associated protein, putative. (434 aa)
	RCOM_1321210	Microfibril-associated protein, putative. (263 aa)
	RCOM_1321220	Microfibril-associated protein, putative. (64 aa)
	RCOM_0034720	Ubiquitin-like domain-containing protein. (73 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0034720	RCOM_0774560	B9SVC3	B9S791	Ubiquitin-like domain-containing protein.	Nucleic acid binding protein, putative.	0.835
RCOM_0034720	RCOM_0999650	B9SVC3	B9RZL7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.805
RCOM_0034720	RCOM_1137830	B9SVC3	B9RPX6	Ubiquitin-like domain-containing protein.	Pre-mRNA-processing protein PRP40, putative.	0.817
RCOM_0034720	RCOM_1321190	B9SVC3	B9SI67	Ubiquitin-like domain-containing protein.	Microfibril-associated protein, putative.	0.869
RCOM_0034720	RCOM_1321210	B9SVC3	B9SI69	Ubiquitin-like domain-containing protein.	Microfibril-associated protein, putative.	0.869
RCOM_0034720	RCOM_1321220	B9SVC3	B9SI70	Ubiquitin-like domain-containing protein.	Microfibril-associated protein, putative.	0.869
RCOM_0034720	RCOM_1434570	B9SVC3	B9RFH3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.805
RCOM_0034720	RCOM_1513170	B9SVC3	B9R923	Ubiquitin-like domain-containing protein.	Epstein-Barr nuclear antigen, putative.	0.873
RCOM_0034720	RCOM_1617910	B9SVC3	B9RE42	Ubiquitin-like domain-containing protein.	WD-repeat protein, putative.	0.847
RCOM_0708800	RCOM_0774560	B9RR36	B9S791	Red protein, putative.	Nucleic acid binding protein, putative.	0.890
RCOM_0708800	RCOM_0999650	B9RR36	B9RZL7	Red protein, putative.	Uncharacterized protein.	0.811
RCOM_0708800	RCOM_1137830	B9RR36	B9RPX6	Red protein, putative.	Pre-mRNA-processing protein PRP40, putative.	0.694
RCOM_0708800	RCOM_1321190	B9RR36	B9SI67	Red protein, putative.	Microfibril-associated protein, putative.	0.910
RCOM_0708800	RCOM_1321210	B9RR36	B9SI69	Red protein, putative.	Microfibril-associated protein, putative.	0.910
RCOM_0708800	RCOM_1321220	B9RR36	B9SI70	Red protein, putative.	Microfibril-associated protein, putative.	0.910
RCOM_0708800	RCOM_1434570	B9RR36	B9RFH3	Red protein, putative.	Uncharacterized protein.	0.811
RCOM_0708800	RCOM_1617910	B9RR36	B9RE42	Red protein, putative.	WD-repeat protein, putative.	0.992
RCOM_0774560	RCOM_0034720	B9S791	B9SVC3	Nucleic acid binding protein, putative.	Ubiquitin-like domain-containing protein.	0.835
RCOM_0774560	RCOM_0708800	B9S791	B9RR36	Nucleic acid binding protein, putative.	Red protein, putative.	0.890
RCOM_0774560	RCOM_0999650	B9S791	B9RZL7	Nucleic acid binding protein, putative.	Uncharacterized protein.	0.872