(17 nodes) Mixed, incl. Ubiquinone and other terpenoid-quinone biosynthesis, and Phenylalanine ammonia-lyase, shielding domain superfamily network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1506860	AMP dependent CoA ligase, putative. (549 aa)
	RCOM_1443470	AMP dependent CoA ligase, putative. (544 aa)
	RCOM_1053300	Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family. (501 aa)
	RCOM_1053330	Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family. (501 aa)
	RCOM_1079870	AMP dependent CoA ligase, putative. (599 aa)
	RCOM_1314480	O-methyltransferase, putative. (273 aa)
	RCOM_1355480	Phenylalanine ammonia-lyase. (714 aa)
	RCOM_1325310	AMP dependent CoA ligase, putative. (573 aa)
	RCOM_0561360	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (359 aa)
	RCOM_0473330	AMP dependent CoA ligase, putative. (542 aa)
	RCOM_1164350	Cinnamate 4-hydroxylase, putative; Belongs to the cytochrome P450 family. (505 aa)
	RCOM_0596300	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	RCOM_0470860	Cinnamoyl-CoA reductase, putative. (339 aa)
	RCOM_1148460	O-methyltransferase, putative. (234 aa)
	RCOM_0543910	Phenylalanine ammonia-lyase, putative; Belongs to the PAL/histidase family. (716 aa)
	RCOM_0262230	Phenylalanine ammonia-lyase. (719 aa)
	RCOM_2017220	Cinnamate 4-hydroxylase, putative; Belongs to the cytochrome P450 family. (536 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0262230	RCOM_0470860	B9T0A8	B9SMT3	Phenylalanine ammonia-lyase.	Cinnamoyl-CoA reductase, putative.	0.864
RCOM_0262230	RCOM_0473330	B9T0A8	B9SCH9	Phenylalanine ammonia-lyase.	AMP dependent CoA ligase, putative.	0.937
RCOM_0262230	RCOM_0561360	B9T0A8	B9S2S3	Phenylalanine ammonia-lyase.	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.515
RCOM_0262230	RCOM_0596300	B9T0A8	B9SIJ9	Phenylalanine ammonia-lyase.	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.523
RCOM_0262230	RCOM_1053300	B9T0A8	B9RKT3	Phenylalanine ammonia-lyase.	Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.	0.554
RCOM_0262230	RCOM_1053330	B9T0A8	B9RKT6	Phenylalanine ammonia-lyase.	Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.	0.554
RCOM_0262230	RCOM_1079870	B9T0A8	B9RMD5	Phenylalanine ammonia-lyase.	AMP dependent CoA ligase, putative.	0.938
RCOM_0262230	RCOM_1148460	B9T0A8	B9SNF3	Phenylalanine ammonia-lyase.	O-methyltransferase, putative.	0.778
RCOM_0262230	RCOM_1164350	B9T0A8	B9SD83	Phenylalanine ammonia-lyase.	Cinnamate 4-hydroxylase, putative; Belongs to the cytochrome P450 family.	0.959
RCOM_0262230	RCOM_1314480	B9T0A8	B9RYX5	Phenylalanine ammonia-lyase.	O-methyltransferase, putative.	0.708
RCOM_0262230	RCOM_1325310	B9T0A8	B9S209	Phenylalanine ammonia-lyase.	AMP dependent CoA ligase, putative.	0.964
RCOM_0262230	RCOM_1443470	B9T0A8	B9RGS2	Phenylalanine ammonia-lyase.	AMP dependent CoA ligase, putative.	0.950
RCOM_0262230	RCOM_1506860	B9T0A8	B9RAJ6	Phenylalanine ammonia-lyase.	AMP dependent CoA ligase, putative.	0.911
RCOM_0262230	RCOM_2017220	B9T0A8	B9T9S7	Phenylalanine ammonia-lyase.	Cinnamate 4-hydroxylase, putative; Belongs to the cytochrome P450 family.	0.966
RCOM_0470860	RCOM_0262230	B9SMT3	B9T0A8	Cinnamoyl-CoA reductase, putative.	Phenylalanine ammonia-lyase.	0.864
RCOM_0470860	RCOM_0473330	B9SMT3	B9SCH9	Cinnamoyl-CoA reductase, putative.	AMP dependent CoA ligase, putative.	0.967
RCOM_0470860	RCOM_0543910	B9SMT3	B9STU5	Cinnamoyl-CoA reductase, putative.	Phenylalanine ammonia-lyase, putative; Belongs to the PAL/histidase family.	0.732
RCOM_0470860	RCOM_0561360	B9SMT3	B9S2S3	Cinnamoyl-CoA reductase, putative.	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.958
RCOM_0470860	RCOM_0596300	B9SMT3	B9SIJ9	Cinnamoyl-CoA reductase, putative.	O-methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.966
RCOM_0470860	RCOM_1053300	B9SMT3	B9RKT3	Cinnamoyl-CoA reductase, putative.	Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.	0.919