(6 nodes) Nuclear pore inner ring, and Nuclear pore organization network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1080750	Nup54 domain-containing protein. (395 aa)
	RCOM_1491250	Nuclear pore complex protein NUP35. (332 aa)
	RCOM_1657160	Nuclear pore protein. (710 aa)
	RCOM_0223680	Uncharacterized protein. (313 aa)
	RCOM_0598070	Uncharacterized protein. (1490 aa)
	RCOM_0738570	Uncharacterized protein. (1783 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0223680	RCOM_0598070	B9SES0	B9SJ33	Uncharacterized protein.	Uncharacterized protein.	0.994
RCOM_0223680	RCOM_0738570	B9SES0	B9SQI9	Uncharacterized protein.	Uncharacterized protein.	0.987
RCOM_0223680	RCOM_1080750	B9SES0	B9RMG3	Uncharacterized protein.	Nup54 domain-containing protein.	0.978
RCOM_0223680	RCOM_1491250	B9SES0	B9RQG6	Uncharacterized protein.	Nuclear pore complex protein NUP35.	0.961
RCOM_0223680	RCOM_1657160	B9SES0	B9S1E0	Uncharacterized protein.	Nuclear pore protein.	0.998
RCOM_0598070	RCOM_0223680	B9SJ33	B9SES0	Uncharacterized protein.	Uncharacterized protein.	0.994
RCOM_0598070	RCOM_0738570	B9SJ33	B9SQI9	Uncharacterized protein.	Uncharacterized protein.	0.995
RCOM_0598070	RCOM_1080750	B9SJ33	B9RMG3	Uncharacterized protein.	Nup54 domain-containing protein.	0.993
RCOM_0598070	RCOM_1491250	B9SJ33	B9RQG6	Uncharacterized protein.	Nuclear pore complex protein NUP35.	0.998
RCOM_0598070	RCOM_1657160	B9SJ33	B9S1E0	Uncharacterized protein.	Nuclear pore protein.	0.995
RCOM_0738570	RCOM_0223680	B9SQI9	B9SES0	Uncharacterized protein.	Uncharacterized protein.	0.987
RCOM_0738570	RCOM_0598070	B9SQI9	B9SJ33	Uncharacterized protein.	Uncharacterized protein.	0.995
RCOM_0738570	RCOM_1080750	B9SQI9	B9RMG3	Uncharacterized protein.	Nup54 domain-containing protein.	0.985
RCOM_0738570	RCOM_1491250	B9SQI9	B9RQG6	Uncharacterized protein.	Nuclear pore complex protein NUP35.	0.984
RCOM_0738570	RCOM_1657160	B9SQI9	B9S1E0	Uncharacterized protein.	Nuclear pore protein.	0.992
RCOM_1080750	RCOM_0223680	B9RMG3	B9SES0	Nup54 domain-containing protein.	Uncharacterized protein.	0.978
RCOM_1080750	RCOM_0598070	B9RMG3	B9SJ33	Nup54 domain-containing protein.	Uncharacterized protein.	0.993
RCOM_1080750	RCOM_0738570	B9RMG3	B9SQI9	Nup54 domain-containing protein.	Uncharacterized protein.	0.985
RCOM_1080750	RCOM_1491250	B9RMG3	B9RQG6	Nup54 domain-containing protein.	Nuclear pore complex protein NUP35.	0.991
RCOM_1080750	RCOM_1657160	B9RMG3	B9S1E0	Nup54 domain-containing protein.	Nuclear pore protein.	0.993