(24 nodes) RNA polymerase III complex, and RNA Polymerase I Transcription Initiation network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1597240	S1 motif domain-containing protein. (229 aa)
	RCOM_1495680	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (485 aa)
	RCOM_1500880	DNA binding protein, putative. (328 aa)
	RCOM_1509920	Uncharacterized protein. (61 aa)
	RCOM_1509930	DNA-directed RNA polymerase I, putative. (75 aa)
	RCOM_1676960	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (236 aa)
	RCOM_1452980	DNA-directed RNA polymerase II, putative. (239 aa)
	RCOM_0712300	DNA binding protein, putative. (286 aa)
	RCOM_0680680	Uncharacterized protein. (190 aa)
	RCOM_0992200	DNA-directed RNA polymerase III 25 kD polypeptide, putative. (194 aa)
	RCOM_0654760	DNA-directed RNA polymerase I 49 kDa polypeptide, putative. (481 aa)
	RCOM_0523110	DNA-directed RNA polymerase I/III subunits, putative. (374 aa)
	RCOM_0700890	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	RCOM_0970060	Transcription initiation factor ia, putative. (640 aa)
	RCOM_0553410	DNA-directed RNA polymerase, putative. (677 aa)
	RCOM_0742740	RPOL4c domain-containing protein. (138 aa)
	RCOM_0620590	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1139 aa)
	RCOM_0090500	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1686 aa)
	RCOM_1248780	SANTA domain-containing protein. (507 aa)
	RCOM_0248850	DNA-directed RNA polymerase II, putative. (238 aa)
	RCOM_0575190	SANTA domain-containing protein. (368 aa)
	RCOM_1440440	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1383 aa)
	RCOM_0373770	Uncharacterized protein. (113 aa)
	RCOM_0069140	Uncharacterized protein. (193 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0069140	RCOM_0090500	B9T586	B9SL65	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.797
RCOM_0069140	RCOM_0248850	B9T586	B9ST46	Uncharacterized protein.	DNA-directed RNA polymerase II, putative.	0.672
RCOM_0069140	RCOM_0373770	B9T586	B9T1F8	Uncharacterized protein.	Uncharacterized protein.	0.724
RCOM_0069140	RCOM_0523110	B9T586	B9S9W7	Uncharacterized protein.	DNA-directed RNA polymerase I/III subunits, putative.	0.908
RCOM_0069140	RCOM_0553410	B9T586	B9SGJ3	Uncharacterized protein.	DNA-directed RNA polymerase, putative.	0.884
RCOM_0069140	RCOM_0575190	B9T586	B9SUV2	Uncharacterized protein.	SANTA domain-containing protein.	0.724
RCOM_0069140	RCOM_0620590	B9T586	B9SHS2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.935
RCOM_0069140	RCOM_0680680	B9T586	B9RT34	Uncharacterized protein.	Uncharacterized protein.	0.797
RCOM_0069140	RCOM_0700890	B9T586	B9SBZ2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.843
RCOM_0069140	RCOM_0712300	B9T586	B9RRC4	Uncharacterized protein.	DNA binding protein, putative.	0.845
RCOM_0069140	RCOM_0742740	B9T586	B9SHR6	Uncharacterized protein.	RPOL4c domain-containing protein.	0.890
RCOM_0069140	RCOM_0992200	B9T586	B9S4T0	Uncharacterized protein.	DNA-directed RNA polymerase III 25 kD polypeptide, putative.	0.873
RCOM_0069140	RCOM_1248780	B9T586	B9SP25	Uncharacterized protein.	SANTA domain-containing protein.	0.841
RCOM_0069140	RCOM_1440440	B9T586	B9T0Q9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.937
RCOM_0069140	RCOM_1452980	B9T586	B9RGC5	Uncharacterized protein.	DNA-directed RNA polymerase II, putative.	0.672
RCOM_0069140	RCOM_1495680	B9T586	B9R9A5	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.902
RCOM_0069140	RCOM_1500880	B9T586	B9R9V4	Uncharacterized protein.	DNA binding protein, putative.	0.845
RCOM_0069140	RCOM_1509920	B9T586	B9RAY9	Uncharacterized protein.	Uncharacterized protein.	0.465
RCOM_0069140	RCOM_1509930	B9T586	B9RAZ0	Uncharacterized protein.	DNA-directed RNA polymerase I, putative.	0.465
RCOM_0069140	RCOM_1676960	B9T586	B9RBH3	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.951