29 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0444530	Ccr4-associated factor, putative. (294 aa)
	RCOM_0313610	Ribonuclease II, putative. (731 aa)
	RCOM_1502620	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (288 aa)
	RCOM_1617470	Endo/exonuclease/phosphatase domain-containing protein. (440 aa)
	RCOM_1031510	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	RCOM_1053860	Endo/exonuclease/phosphatase domain-containing protein. (809 aa)
	RCOM_1341420	Carbon catabolite repressor protein, putative. (471 aa)
	RCOM_0921770	Ccr4-associated factor, putative. (274 aa)
	RCOM_1378060	Oligoribonuclease, mitochondrial, putative. (232 aa)
	RCOM_1243340	Protein dom-3, putative. (528 aa)
	RCOM_0866780	RNA exonuclease NGL1, putative. (443 aa)
	RCOM_0993080	Ccr4-associated factor, putative. (161 aa)
	RCOM_0757190	Carbon catabolite repressor protein, putative. (456 aa)
	RCOM_0875030	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
	RCOM_0522460	Uncharacterized protein. (699 aa)
	RCOM_0650270	Exonuclease, putative. (329 aa)
	RCOM_1282470	Ccr4-associated factor, putative. (281 aa)
	RCOM_0487950	3'-5' exonuclease, putative. (977 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_1321750	3'-5' exonuclease, putative. (857 aa)
	RCOM_1627130	Ribonuclease, putative. (624 aa)
	RCOM_0470900	Ccr4-associated factor, putative. (274 aa)
	RCOM_0623210	Uncharacterized protein. (258 aa)
	RCOM_1264730	Exonuclease domain-containing protein. (409 aa)
	RCOM_0225810	Ccr4-associated factor, putative. (292 aa)
	RCOM_0063290	Exosome complex exonuclease rrp45, putative. (463 aa)
	RCOM_0041430	Carbon catabolite repressor protein, putative. (603 aa)
	RCOM_0199720	Endo/exonuclease/phosphatase domain-containing protein. (447 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0041430	RCOM_0225810	B9SYV1	B9SVZ3	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.852
RCOM_0041430	RCOM_0444530	B9SYV1	B9T4R6	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.852
RCOM_0041430	RCOM_0470900	B9SYV1	B9SMT7	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.852
RCOM_0041430	RCOM_0866780	B9SYV1	B9S1N8	Carbon catabolite repressor protein, putative.	RNA exonuclease NGL1, putative.	0.905
RCOM_0041430	RCOM_0921770	B9SYV1	B9RNX3	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.852
RCOM_0041430	RCOM_0993080	B9SYV1	B9S4V8	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.794
RCOM_0041430	RCOM_1282470	B9SYV1	B9SCZ3	Carbon catabolite repressor protein, putative.	Ccr4-associated factor, putative.	0.852
RCOM_0063290	RCOM_0313610	B9SYQ9	B9T6X7	Exosome complex exonuclease rrp45, putative.	Ribonuclease II, putative.	0.988
RCOM_0063290	RCOM_0487950	B9SYQ9	B9SDW9	Exosome complex exonuclease rrp45, putative.	3'-5' exonuclease, putative.	0.990
RCOM_0063290	RCOM_0875030	B9SYQ9	B9S6W9	Exosome complex exonuclease rrp45, putative.	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family.	0.988
RCOM_0063290	RCOM_1031510	B9SYQ9	B9RJ60	Exosome complex exonuclease rrp45, putative.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.988
RCOM_0063290	RCOM_1321750	B9SYQ9	B9SI83	Exosome complex exonuclease rrp45, putative.	3'-5' exonuclease, putative.	0.990
RCOM_0199720	RCOM_0225810	B9T591	B9SVZ3	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0199720	RCOM_0444530	B9T591	B9T4R6	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0199720	RCOM_0470900	B9T591	B9SMT7	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0199720	RCOM_0921770	B9T591	B9RNX3	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0199720	RCOM_0993080	B9T591	B9S4V8	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0199720	RCOM_1282470	B9T591	B9SCZ3	Endo/exonuclease/phosphatase domain-containing protein.	Ccr4-associated factor, putative.	0.692
RCOM_0225810	RCOM_0041430	B9SVZ3	B9SYV1	Ccr4-associated factor, putative.	Carbon catabolite repressor protein, putative.	0.852
RCOM_0225810	RCOM_0199720	B9SVZ3	B9T591	Ccr4-associated factor, putative.	Endo/exonuclease/phosphatase domain-containing protein.	0.692