90 items (Ricinus communis) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	RCOM_1434540	3-5 exonuclease, putative. (570 aa)
	RCOM_1434480	Exonuclease, putative. (334 aa)
	RCOM_1428570	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (964 aa)
	RCOM_1774950	Cleavage and polyadenylation specificity factor 73 kDa subunit, putative. (361 aa)
	RCOM_1617470	Endo/exonuclease/phosphatase domain-containing protein. (440 aa)
	RCOM_1507510	Ap endonuclease, putative. (326 aa)
	RCOM_1506620	Myb-like domain-containing protein. (880 aa)
	RCOM_1502620	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (288 aa)
	RCOM_1597380	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1113 aa)
	RCOM_1913950	POLIIIAc domain-containing protein. (242 aa)
	RCOM_1884810	DNA polymerase I, putative. (176 aa)
	RCOM_1826090	Single-stranded-DNA-specific exonuclease recJ, putative. (369 aa)
	RCOM_1813900	DNA polymerase I, putative. (152 aa)
	RCOM_1854780	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (130 aa)
	RCOM_1872500	Deoxyribonuclease tatD, putative. (174 aa)
	RCOM_0413950	DNA polymerase I, putative. (409 aa)
	RCOM_0582440	3-5 exonuclease, putative. (211 aa)
	RCOM_0470900	Ccr4-associated factor, putative. (274 aa)
	RCOM_1627130	Ribonuclease, putative. (624 aa)
	RCOM_0686700	DNA polymerase I, putative. (411 aa)
	RCOM_1027520	Uncharacterized protein. (795 aa)
	RCOM_1399380	Uncharacterized protein. (412 aa)
	RCOM_1254650	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (765 aa)
	RCOM_1321750	3'-5' exonuclease, putative. (857 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_1153050	Exonuclease, putative. (504 aa)
	RCOM_0648420	Exonuclease, putative. (365 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_0487950	3'-5' exonuclease, putative. (977 aa)
	RCOM_0420260	TatD DNase domain-containing deoxyribonuclease, putative. (304 aa)
	RCOM_1282650	5'->3' exoribonuclease, putative. (993 aa)
	RCOM_0570820	Exonuclease, putative. (576 aa)
	RCOM_0627060	DNA cross-link repair protein pso2/snm1, putative. (543 aa)
	RCOM_0033810	Exosome complex exonuclease RRP41, putative. (180 aa)
	RCOM_1264730	Exonuclease domain-containing protein. (409 aa)
	RCOM_0255500	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (486 aa)
	RCOM_0225810	Ccr4-associated factor, putative. (292 aa)
	RCOM_0265760	POLIIIAc domain-containing protein. (302 aa)
	RCOM_0489380	Aprataxin, putative. (749 aa)
	RCOM_0547680	DNA polymerase I, putative. (246 aa)
	RCOM_0547690	Uncharacterized protein. (180 aa)
	RCOM_0063290	Exosome complex exonuclease rrp45, putative. (463 aa)
	RCOM_0041430	Carbon catabolite repressor protein, putative. (603 aa)
	RCOM_0444530	Ccr4-associated factor, putative. (294 aa)
	RCOM_0199720	Endo/exonuclease/phosphatase domain-containing protein. (447 aa)
	RCOM_0313610	Ribonuclease II, putative. (731 aa)
	RCOM_0360290	DNA polymerase I, putative. (267 aa)
	RCOM_1282470	Ccr4-associated factor, putative. (281 aa)
	RCOM_0650270	Exonuclease, putative. (329 aa)
	RCOM_0586580	DNA polymerase I, putative. (963 aa)
	RCOM_0523740	3'-5' exonuclease, putative. (149 aa)
	RCOM_0522460	Uncharacterized protein. (699 aa)
	RCOM_0507600	DNA cross-link repair protein pso2/snm1, putative. (427 aa)
	RCOM_1253140	Exonuclease, putative. (629 aa)
	RCOM_0875030	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
	RCOM_0870510	Ap endonuclease, putative. (586 aa)
	RCOM_0757190	Carbon catabolite repressor protein, putative. (456 aa)
	RCOM_0993080	Ccr4-associated factor, putative. (161 aa)
	RCOM_0559410	Rnase h, putative. (572 aa)
	RCOM_1323640	5'->3' exoribonuclease, putative. (1545 aa)
	RCOM_0623210	Uncharacterized protein. (258 aa)
	RCOM_0792580	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2227 aa)
	RCOM_0984330	Exonuclease, putative. (194 aa)
	RCOM_1411860	3'-5' exonuclease, putative. (225 aa)
	RCOM_0643640	3'-5' exonuclease, putative. (247 aa)
	RCOM_0866780	RNA exonuclease NGL1, putative. (443 aa)
	RCOM_0905770	Tyrosyl-DNA phosphodiesterase, putative. (665 aa)
	RCOM_0903920	Hydrolase, putative. (429 aa)
	RCOM_1742960	RNA exonuclease, putative. (299 aa)
	RCOM_1749150	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (188 aa)
	RCOM_1749140	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (308 aa)
	RCOM_1748920	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (205 aa)
	RCOM_0850550	RNA exonuclease, putative. (317 aa)
	RCOM_1243340	Protein dom-3, putative. (528 aa)
	RCOM_0799080	Exosome complex exonuclease RRP46, putative. (211 aa)
	RCOM_0798510	3'-5' exonuclease, putative. (342 aa)
	RCOM_0707890	DNA cross-link repair protein pso2/snm1, putative. (737 aa)
	RCOM_1551270	DNA polymerase. (1049 aa)
	RCOM_1378060	Oligoribonuclease, mitochondrial, putative. (232 aa)
	RCOM_1377360	3-5 exonuclease, putative. (523 aa)
	RCOM_0924620	Uncharacterized protein. (386 aa)
	RCOM_0921770	Ccr4-associated factor, putative. (274 aa)
	RCOM_1341420	Carbon catabolite repressor protein, putative. (471 aa)
	RCOM_1471250	Exonuclease, putative. (501 aa)
	RCOM_1471240	Exonuclease, putative. (448 aa)
	RCOM_1053860	Endo/exonuclease/phosphatase domain-containing protein. (809 aa)
	RCOM_1031510	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	RCOM_1443960	DNA cross-link repair protein pso2/snm1, putative. (493 aa)
	RCOM_1437290	Uncharacterized protein. (211 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (345 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FEN1	RCOM_0255500	B9RFS3	B9SVS9	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.720
FEN1	RCOM_0360290	B9RFS3	B9T8Y9	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase I, putative.	0.509
FEN1	RCOM_0413950	B9RFS3	B9TBG6	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase I, putative.	0.509
FEN1	RCOM_0489380	B9RFS3	B9SWY0	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Aprataxin, putative.	0.749
FEN1	RCOM_0523740	B9RFS3	B9S9Z0	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	3'-5' exonuclease, putative.	0.559
FEN1	RCOM_0547680	B9RFS3	B9SX53	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase I, putative.	0.509
FEN1	RCOM_0547690	B9RFS3	B9SX54	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.509
FEN1	RCOM_0570820	B9RFS3	B9SU84	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Exonuclease, putative.	0.760
FEN1	RCOM_0582440	B9RFS3	B9SNW3	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	3-5 exonuclease, putative.	0.559
FEN1	RCOM_0586580	B9RFS3	B9SAH0	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase I, putative.	0.509
FEN1	RCOM_0643640	B9RFS3	B9SQ24	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	3'-5' exonuclease, putative.	0.559
FEN1	RCOM_0792580	B9RFS3	B9SSU6	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.884
FEN1	RCOM_0799080	B9RFS3	B9RRX9	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Exosome complex exonuclease RRP46, putative.	0.410
FEN1	RCOM_0870510	B9RFS3	B9S6N7	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Ap endonuclease, putative.	0.811
FEN1	RCOM_0903920	B9RFS3	B9RXJ5	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Hydrolase, putative.	0.416
FEN1	RCOM_0905770	B9RFS3	B9RXR7	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Tyrosyl-DNA phosphodiesterase, putative.	0.546
FEN1	RCOM_1027520	B9RFS3	B9SK67	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.978
FEN1	RCOM_1253140	B9RFS3	B9S8I1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Exonuclease, putative.	0.760
FEN1	RCOM_1254650	B9RFS3	B9SIE0	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.898
FEN1	RCOM_1411860	B9RFS3	B9SRJ8	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	3'-5' exonuclease, putative.	0.559