11 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0915910	Uncharacterized protein. (80 aa)
	RCOM_0303300	Copper transporter, putative. (163 aa)
	RCOM_0507790	Uncharacterized protein. (66 aa)
	RCOM_0597520	Copper transporter, putative. (82 aa)
	RCOM_0821630	Uncharacterized protein. (66 aa)
	RCOM_1153850	Heavy metal cation transport atpase, putative. (820 aa)
	RCOM_0731740	Copper transporter, putative. (140 aa)
	RCOM_0731730	Copper transporter, putative. (113 aa)
	RCOM_1306150	Copper transporter, putative. (82 aa)
	RCOM_0711470	Copper transporter, putative. (144 aa)
	RCOM_0707700	Copper transporter, putative. (143 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0507790	RCOM_0915910	B9T0E5	B9T260	Uncharacterized protein.	Uncharacterized protein.	0.712
RCOM_0707700	RCOM_1153850	B9RQY6	B9SG08	Copper transporter, putative.	Heavy metal cation transport atpase, putative.	0.425
RCOM_0711470	RCOM_1153850	B9RR93	B9SG08	Copper transporter, putative.	Heavy metal cation transport atpase, putative.	0.425
RCOM_0821630	RCOM_0915910	B9SIK2	B9T260	Uncharacterized protein.	Uncharacterized protein.	0.712
RCOM_0915910	RCOM_0507790	B9T260	B9T0E5	Uncharacterized protein.	Uncharacterized protein.	0.712
RCOM_0915910	RCOM_0821630	B9T260	B9SIK2	Uncharacterized protein.	Uncharacterized protein.	0.712
RCOM_1153850	RCOM_0707700	B9SG08	B9RQY6	Heavy metal cation transport atpase, putative.	Copper transporter, putative.	0.425
RCOM_1153850	RCOM_0711470	B9SG08	B9RR93	Heavy metal cation transport atpase, putative.	Copper transporter, putative.	0.425