16 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1039350	Uncharacterized protein. (63 aa)
	RCOM_1180040	Syntaxin, putative; Belongs to the syntaxin family. (342 aa)
	RCOM_0536690	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (166 aa)
	RCOM_0993500	AP-1 complex subunit gamma. (875 aa)
	RCOM_1222120	Vacuolar protein sorting protein, putative. (713 aa)
	RCOM_1039340	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family. (421 aa)
	RCOM_1434450	Syntaxin, putative; Belongs to the syntaxin family. (323 aa)
	RCOM_1595530	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family. (472 aa)
	RCOM_1920320	Uncharacterized protein. (149 aa)
	RCOM_1789310	Uncharacterized protein. (102 aa)
	RCOM_0293470	Sorting nexin 3, putative. (399 aa)
	RCOM_1057980	Vacuolar sorting receptor 1, putative. (625 aa)
	RCOM_1195900	EGF_CA domain-containing protein. (181 aa)
	RCOM_0175340	Zinc finger protein, putative. (633 aa)
	RCOM_1557940	Vacuolar protein sorting, putative. (1046 aa)
	RCOM_0726280	Uncharacterized protein. (848 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0175340	RCOM_1057980	B9SNE0	B9SRT1	Zinc finger protein, putative.	Vacuolar sorting receptor 1, putative.	0.545
RCOM_0293470	RCOM_0993500	B9SWH8	B9S4M0	Sorting nexin 3, putative.	AP-1 complex subunit gamma.	0.403
RCOM_0536690	RCOM_0726280	B9S6H3	B9SFZ1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.949
RCOM_0536690	RCOM_0993500	B9S6H3	B9S4M0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma.	0.874
RCOM_0536690	RCOM_1039340	B9S6H3	B9RJW2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.596
RCOM_0536690	RCOM_1595530	B9S6H3	B9R7Z0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.596
RCOM_0726280	RCOM_0536690	B9SFZ1	B9S6H3	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.949
RCOM_0726280	RCOM_0993500	B9SFZ1	B9S4M0	Uncharacterized protein.	AP-1 complex subunit gamma.	0.645
RCOM_0726280	RCOM_1039340	B9SFZ1	B9RJW2	Uncharacterized protein.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.691
RCOM_0726280	RCOM_1039350	B9SFZ1	B9RJW3	Uncharacterized protein.	Uncharacterized protein.	0.537
RCOM_0726280	RCOM_1595530	B9SFZ1	B9R7Z0	Uncharacterized protein.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.691
RCOM_0993500	RCOM_0293470	B9S4M0	B9SWH8	AP-1 complex subunit gamma.	Sorting nexin 3, putative.	0.403
RCOM_0993500	RCOM_0536690	B9S4M0	B9S6H3	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.874
RCOM_0993500	RCOM_0726280	B9S4M0	B9SFZ1	AP-1 complex subunit gamma.	Uncharacterized protein.	0.645
RCOM_0993500	RCOM_1039340	B9S4M0	B9RJW2	AP-1 complex subunit gamma.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.882
RCOM_0993500	RCOM_1039350	B9S4M0	B9RJW3	AP-1 complex subunit gamma.	Uncharacterized protein.	0.786
RCOM_0993500	RCOM_1595530	B9S4M0	B9R7Z0	AP-1 complex subunit gamma.	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	0.857
RCOM_1039340	RCOM_0536690	B9RJW2	B9S6H3	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.596
RCOM_1039340	RCOM_0726280	B9RJW2	B9SFZ1	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.691
RCOM_1039340	RCOM_0993500	B9RJW2	B9S4M0	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.882