34 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1593880	Cop9 complex subunit, putative. (397 aa)
	RCOM_1514990	Phytochrome kinase substrate, putative. (424 aa)
	RCOM_1678560	26S proteasome regulatory subunit S3, putative. (427 aa)
	RCOM_1691060	Ubiquitin ligase protein cop1, putative. (1044 aa)
	RCOM_1608290	Cop9 complex subunit 7a, putative. (275 aa)
	RCOM_1437130	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1124 aa)
	RCOM_1470600	DNA binding protein, putative. (440 aa)
	RCOM_0924540	Transcription factor hy5, putative. (169 aa)
	RCOM_1171040	Cop9 complex subunit 7a, putative. (135 aa)
	RCOM_1000590	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1141 aa)
	RCOM_1004100	Transcription factor HY5, putative. (172 aa)
	RCOM_1300050	Light-mediated development protein DET1, putative. (572 aa)
	RCOM_0634650	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1131 aa)
	RCOM_0809110	Uncharacterized protein. (549 aa)
	RCOM_0809580	Protein SENSITIVITY TO RED LIGHT REDUCED, putative. (276 aa)
	RCOM_0836100	Uncharacterized protein. (509 aa)
	RCOM_1012180	Uncharacterized protein. (484 aa)
	RCOM_1178010	Phytochrome A-associated F-box protein, putative. (332 aa)
	RCOM_0107340	Protein AFR, putative. (292 aa)
	RCOM_0554450	Uncharacterized protein. (398 aa)
	RCOM_0612480	Elf4 domain-containing protein. (120 aa)
	RCOM_1091910	DNA repair protein xp-E, putative. (1033 aa)
	RCOM_1311460	BHLH domain-containing protein. (260 aa)
	RCOM_0878930	Ubiquitin-conjugating enzyme E2, putative. (181 aa)
	RCOM_1183590	Cop9 signalosome complex subunit 8 (Csn complex subunit 8), putative. (176 aa)
	RCOM_0613000	Protein phosphatase-7, putative. (166 aa)
	RCOM_0613110	Protein phosphatase-7, putative. (143 aa)
	RCOM_0353890	Uncharacterized protein. (561 aa)
	RCOM_0191930	Cop9 complex subunit 7a, putative. (253 aa)
	RCOM_1394390	Cop9 signalosome complex subunit, putative. (439 aa)
	RCOM_0149760	Ubiquitin ligase protein cop1, putative. (1011 aa)
	RCOM_0073590	Ubiquitin ligase protein cop1, putative. (889 aa)
	RCOM_0339610	Elf4 domain-containing protein. (137 aa)
	RCOM_0002700	Ubiquitin ligase protein cop1, putative. (677 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0002700	RCOM_0073590	B9T7A8	B9T5N2	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.611
RCOM_0002700	RCOM_0149760	B9T7A8	B9T343	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.710
RCOM_0002700	RCOM_0339610	B9T7A8	B9T5X8	Ubiquitin ligase protein cop1, putative.	Elf4 domain-containing protein.	0.540
RCOM_0002700	RCOM_0634650	B9T7A8	B9S180	Ubiquitin ligase protein cop1, putative.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.551
RCOM_0002700	RCOM_0878930	B9T7A8	B9SM61	Ubiquitin ligase protein cop1, putative.	Ubiquitin-conjugating enzyme E2, putative.	0.865
RCOM_0002700	RCOM_0924540	B9T7A8	B9RP68	Ubiquitin ligase protein cop1, putative.	Transcription factor hy5, putative.	0.996
RCOM_0002700	RCOM_1000590	B9T7A8	B9RZR1	Ubiquitin ligase protein cop1, putative.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.633
RCOM_0002700	RCOM_1004100	B9T7A8	B9S029	Ubiquitin ligase protein cop1, putative.	Transcription factor HY5, putative.	0.991
RCOM_0002700	RCOM_1091910	B9T7A8	B9SKT9	Ubiquitin ligase protein cop1, putative.	DNA repair protein xp-E, putative.	0.616
RCOM_0002700	RCOM_1300050	B9T7A8	B9S080	Ubiquitin ligase protein cop1, putative.	Light-mediated development protein DET1, putative.	0.973
RCOM_0002700	RCOM_1311460	B9T7A8	B9SM08	Ubiquitin ligase protein cop1, putative.	BHLH domain-containing protein.	0.633
RCOM_0002700	RCOM_1437130	B9T7A8	B9RFS7	Ubiquitin ligase protein cop1, putative.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.834
RCOM_0002700	RCOM_1470600	B9T7A8	B9RLT3	Ubiquitin ligase protein cop1, putative.	DNA binding protein, putative.	0.523
RCOM_0002700	RCOM_1691060	B9T7A8	B9RCP1	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.710
RCOM_0073590	RCOM_0002700	B9T5N2	B9T7A8	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.611
RCOM_0073590	RCOM_0149760	B9T5N2	B9T343	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.519
RCOM_0073590	RCOM_0878930	B9T5N2	B9SM61	Ubiquitin ligase protein cop1, putative.	Ubiquitin-conjugating enzyme E2, putative.	0.608
RCOM_0073590	RCOM_0924540	B9T5N2	B9RP68	Ubiquitin ligase protein cop1, putative.	Transcription factor hy5, putative.	0.642
RCOM_0073590	RCOM_1004100	B9T5N2	B9S029	Ubiquitin ligase protein cop1, putative.	Transcription factor HY5, putative.	0.500
RCOM_0073590	RCOM_1091910	B9T5N2	B9SKT9	Ubiquitin ligase protein cop1, putative.	DNA repair protein xp-E, putative.	0.472