(37 nodes) Xylem and phloem pattern formation network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0212780	Root phototropism protein, putative; Belongs to the NPH3 family. (643 aa)
	RCOM_0566910	Uncharacterized protein. (97 aa)
	RCOM_1156630	Bel1 homeotic protein, putative. (599 aa)
	RCOM_0792840	WD-repeat protein, putative. (623 aa)
	RCOM_0046630	COR domain-containing protein. (1384 aa)
	RCOM_1124350	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (697 aa)
	RCOM_0495920	Tip120, putative. (1218 aa)
	RCOM_0298500	ATP-dependent RNA helicase, putative. (1269 aa)
	RCOM_0647070	Uncharacterized protein. (79 aa)
	RCOM_0646060	Ice binding protein, putative. (486 aa)
	RCOM_0959740	Uncharacterized protein. (264 aa)
	RCOM_1289780	Uncharacterized protein. (593 aa)
	RCOM_1336800	Uncharacterized protein. (970 aa)
	RCOM_0837790	Protein kinase, putative; Belongs to the protein kinase superfamily. (431 aa)
	RCOM_1250180	Pentatricopeptide repeat-containing protein, putative. (640 aa)
	RCOM_0867870	ATP-binding cassette transporter, putative. (634 aa)
	RCOM_0999810	Uncharacterized protein. (210 aa)
	RCOM_0810770	Uncharacterized protein. (391 aa)
	RCOM_0810740	Uncharacterized protein. (127 aa)
	RCOM_0810730	Uncharacterized protein. (71 aa)
	RCOM_0903100	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family. (269 aa)
	RCOM_1018430	DUF3883 domain-containing protein. (2833 aa)
	RCOM_0911120	Ice binding protein, putative. (477 aa)
	RCOM_1347190	Uncharacterized protein. (783 aa)
	RCOM_1079860	F-box domain-containing protein. (470 aa)
	RCOM_1052510	Uncharacterized protein. (242 aa)
	RCOM_1576200	Uncharacterized protein. (600 aa)
	RCOM_1612240	DNA binding protein, putative. (324 aa)
	RCOM_1681210	DNA binding protein, putative. (322 aa)
	RCOM_1498970	DNA binding protein, putative. (198 aa)
	RCOM_1593550	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (356 aa)
	RCOM_1588080	Epimerase domain-containing protein. (390 aa)
	RCOM_1584610	Receptor protein kinase, putative; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (933 aa)
	RCOM_1584500	Receptor protein kinase, putative; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (956 aa)
	RCOM_0158110	Uncharacterized protein. (258 aa)
	RCOM_0411600	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (375 aa)
	RCOM_0691100	Auxin_canalis domain-containing protein. (99 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0046630	RCOM_0212780	B9SSS4	B9SZ41	COR domain-containing protein.	Root phototropism protein, putative; Belongs to the NPH3 family.	0.509
RCOM_0046630	RCOM_0647070	B9SSS4	B9SFL1	COR domain-containing protein.	Uncharacterized protein.	0.410
RCOM_0046630	RCOM_0903100	B9SSS4	B9RXE3	COR domain-containing protein.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.410
RCOM_0212780	RCOM_0046630	B9SZ41	B9SSS4	Root phototropism protein, putative; Belongs to the NPH3 family.	COR domain-containing protein.	0.509
RCOM_0298500	RCOM_0792840	B9SMB4	B9SSV2	ATP-dependent RNA helicase, putative.	WD-repeat protein, putative.	0.836
RCOM_0647070	RCOM_0046630	B9SFL1	B9SSS4	Uncharacterized protein.	COR domain-containing protein.	0.410
RCOM_0691100	RCOM_1289780	B9T1T6	B9SDR2	Auxin_canalis domain-containing protein.	Uncharacterized protein.	0.491
RCOM_0691100	RCOM_1576200	B9T1T6	B9RI45	Auxin_canalis domain-containing protein.	Uncharacterized protein.	0.486
RCOM_0792840	RCOM_0298500	B9SSV2	B9SMB4	WD-repeat protein, putative.	ATP-dependent RNA helicase, putative.	0.836
RCOM_0810730	RCOM_0810740	B9RY69	B9RY70	Uncharacterized protein.	Uncharacterized protein.	0.522
RCOM_0810740	RCOM_0810730	B9RY70	B9RY69	Uncharacterized protein.	Uncharacterized protein.	0.522
RCOM_0903100	RCOM_0046630	B9RXE3	B9SSS4	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	COR domain-containing protein.	0.410
RCOM_0903100	RCOM_1681210	B9RXE3	B9RBU6	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	DNA binding protein, putative.	0.415
RCOM_1289780	RCOM_0691100	B9SDR2	B9T1T6	Uncharacterized protein.	Auxin_canalis domain-containing protein.	0.491
RCOM_1576200	RCOM_0691100	B9RI45	B9T1T6	Uncharacterized protein.	Auxin_canalis domain-containing protein.	0.486
RCOM_1681210	RCOM_0903100	B9RBU6	B9RXE3	DNA binding protein, putative.	Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.	0.415