15 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1595530	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family. (472 aa)
	RCOM_1597810	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	RCOM_1509430	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family. (428 aa)
	RCOM_1435740	Clathrin coat adaptor ap3 medium chain, putative; Belongs to the adaptor complexes medium subunit family. (415 aa)
	RCOM_1039340	AP-4 complex subunit mu-1, putative; Belongs to the adaptor complexes medium subunit family. (421 aa)
	RCOM_1039350	Uncharacterized protein. (63 aa)
	RCOM_1563770	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (161 aa)
	RCOM_1369180	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (153 aa)
	RCOM_0803100	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. (848 aa)
	RCOM_0678700	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (632 aa)
	RCOM_0864950	Clathrin coat associated protein ap-50, putative; Belongs to the adaptor complexes medium subunit family. (408 aa)
	RCOM_0993500	AP-1 complex subunit gamma. (875 aa)
	RCOM_0786070	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. (903 aa)
	RCOM_1186100	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. (1018 aa)
	RCOM_0024490	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family. (309 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0024490	RCOM_0786070	B9SPJ2	B9SB76	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.887
RCOM_0024490	RCOM_0803100	B9SPJ2	B9RS58	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.848
RCOM_0024490	RCOM_0864950	B9SPJ2	B9S1G6	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	Clathrin coat associated protein ap-50, putative; Belongs to the adaptor complexes medium subunit family.	0.525
RCOM_0024490	RCOM_0993500	B9SPJ2	B9S4M0	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.883
RCOM_0024490	RCOM_1186100	B9SPJ2	B9SN68	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome.	0.747
RCOM_0024490	RCOM_1369180	B9SPJ2	B9RPF5	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.863
RCOM_0024490	RCOM_1435740	B9SPJ2	B9RFL9	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	Clathrin coat adaptor ap3 medium chain, putative; Belongs to the adaptor complexes medium subunit family.	0.415
RCOM_0024490	RCOM_1563770	B9SPJ2	B9RKW9	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.860
RCOM_0024490	RCOM_1597810	B9SPJ2	B9R884	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.671
RCOM_0678700	RCOM_0786070	B9RSU7	B9SB76	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.884
RCOM_0678700	RCOM_0803100	B9RSU7	B9RS58	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.897
RCOM_0678700	RCOM_0864950	B9RSU7	B9S1G6	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Clathrin coat associated protein ap-50, putative; Belongs to the adaptor complexes medium subunit family.	0.603
RCOM_0678700	RCOM_0993500	B9RSU7	B9S4M0	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.897
RCOM_0678700	RCOM_1186100	B9RSU7	B9SN68	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome.	0.849
RCOM_0678700	RCOM_1369180	B9RSU7	B9RPF5	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.805
RCOM_0678700	RCOM_1435740	B9RSU7	B9RFL9	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Clathrin coat adaptor ap3 medium chain, putative; Belongs to the adaptor complexes medium subunit family.	0.415
RCOM_0678700	RCOM_1563770	B9RSU7	B9RKW9	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.805
RCOM_0678700	RCOM_1597810	B9RSU7	B9R884	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.530
RCOM_0786070	RCOM_0024490	B9SB76	B9SPJ2	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Clathrin coat assembly protein ap-1, putative; Belongs to the adaptor complexes medium subunit family.	0.887
RCOM_0786070	RCOM_0678700	B9SB76	B9RSU7	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.884