20 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1600880	Ribosome biogenesis protein tsr1, putative. (792 aa)
	RCOM_1501550	BP28CT domain-containing protein. (2130 aa)
	RCOM_1506680	Nucleolar protein nop56, putative. (558 aa)
	RCOM_1619060	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (157 aa)
	RCOM_1429120	Nucleolar protein nop56, putative. (575 aa)
	RCOM_1453070	U3 small nucleolar ribonucleoprotein protein imp4, putative. (180 aa)
	RCOM_1453180	U3 small nucleolar ribonucleoprotein protein imp4, putative. (293 aa)
	RCOM_0952700	Bystin, putative. (448 aa)
	RCOM_1635820	Ribosome biogenesis protein bms1, putative. (825 aa)
	RCOM_1635930	Ribosome biogenesis protein bms1, putative. (284 aa)
	RCOM_0853170	Nop14, putative. (865 aa)
	RCOM_0903860	Hepatocellular carcinoma-associated antigen, putative. (652 aa)
	RCOM_1353350	WD-repeat protein, putative. (950 aa)
	RCOM_1223140	U3 small nucleolar RNA-interacting protein, putative. (572 aa)
	RCOM_1327280	U3 small nucleolar RNA-associated protein, putative. (876 aa)
	RCOM_1194440	Uncharacterized protein. (721 aa)
	RCOM_1121660	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (194 aa)
	RCOM_0790970	U3 small nucleolar ribonucleoprotein protein IMP3, putative. (182 aa)
	RCOM_0260310	Ribosome biogenesis protein nop10, putative. (64 aa)
	RCOM_0546040	Nucleolar protein nop56, putative. (558 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0260310	RCOM_0546040	B9SV31	B9T4Q4	Ribosome biogenesis protein nop10, putative.	Nucleolar protein nop56, putative.	0.853
RCOM_0260310	RCOM_0790970	B9SV31	B9SIX4	Ribosome biogenesis protein nop10, putative.	U3 small nucleolar ribonucleoprotein protein IMP3, putative.	0.642
RCOM_0260310	RCOM_0952700	B9SV31	B9RQ30	Ribosome biogenesis protein nop10, putative.	Bystin, putative.	0.495
RCOM_0260310	RCOM_1121660	B9SV31	B9SHF9	Ribosome biogenesis protein nop10, putative.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.997
RCOM_0260310	RCOM_1223140	B9SV31	B9S0S6	Ribosome biogenesis protein nop10, putative.	U3 small nucleolar RNA-interacting protein, putative.	0.538
RCOM_0260310	RCOM_1429120	B9SV31	B9REV8	Ribosome biogenesis protein nop10, putative.	Nucleolar protein nop56, putative.	0.853
RCOM_0260310	RCOM_1453070	B9SV31	B9RGD4	Ribosome biogenesis protein nop10, putative.	U3 small nucleolar ribonucleoprotein protein imp4, putative.	0.457
RCOM_0260310	RCOM_1453180	B9SV31	B9RGD5	Ribosome biogenesis protein nop10, putative.	U3 small nucleolar ribonucleoprotein protein imp4, putative.	0.457
RCOM_0260310	RCOM_1501550	B9SV31	B9R9Y1	Ribosome biogenesis protein nop10, putative.	BP28CT domain-containing protein.	0.507
RCOM_0260310	RCOM_1506680	B9SV31	B9RAI8	Ribosome biogenesis protein nop10, putative.	Nucleolar protein nop56, putative.	0.923
RCOM_0260310	RCOM_1619060	B9SV31	B9RE76	Ribosome biogenesis protein nop10, putative.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
RCOM_0260310	RCOM_1635820	B9SV31	B9RU90	Ribosome biogenesis protein nop10, putative.	Ribosome biogenesis protein bms1, putative.	0.483
RCOM_0260310	RCOM_1635930	B9SV31	B9RU91	Ribosome biogenesis protein nop10, putative.	Ribosome biogenesis protein bms1, putative.	0.483
RCOM_0546040	RCOM_0260310	B9T4Q4	B9SV31	Nucleolar protein nop56, putative.	Ribosome biogenesis protein nop10, putative.	0.853
RCOM_0546040	RCOM_0790970	B9T4Q4	B9SIX4	Nucleolar protein nop56, putative.	U3 small nucleolar ribonucleoprotein protein IMP3, putative.	0.975
RCOM_0546040	RCOM_0853170	B9T4Q4	B9RUI4	Nucleolar protein nop56, putative.	Nop14, putative.	0.991
RCOM_0546040	RCOM_0903860	B9T4Q4	B9RXI9	Nucleolar protein nop56, putative.	Hepatocellular carcinoma-associated antigen, putative.	0.974
RCOM_0546040	RCOM_0952700	B9T4Q4	B9RQ30	Nucleolar protein nop56, putative.	Bystin, putative.	0.973
RCOM_0546040	RCOM_1121660	B9T4Q4	B9SHF9	Nucleolar protein nop56, putative.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.966
RCOM_0546040	RCOM_1194440	B9T4Q4	B9S320	Nucleolar protein nop56, putative.	Uncharacterized protein.	0.660