25 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0771080	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_0771300	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_0255520	U4/U6 small nuclear ribonucleoprotein Prp4, putative. (541 aa)
	RCOM_0128050	PRP1_N domain-containing protein. (78 aa)
	RCOM_0986580	Mitosis protein dim1, putative. (214 aa)
	RCOM_0729670	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	RCOM_0404830	Uncharacterized protein. (683 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	RCOM_0510040	116 kD U5 small nuclear ribonucleoprotein component, putative. (992 aa)
	RCOM_0151030	Small nuclear ribonucleoprotein f, putative. (91 aa)
	RCOM_1434620	Zinc finger protein, putative. (202 aa)
	RCOM_0800560	Uncharacterized protein. (873 aa)
	RCOM_1175540	Pre-mRNA splicing factor, putative. (1031 aa)
	RCOM_0557340	Potassium channel regulatory factor, putative. (417 aa)
	RCOM_1721340	Spliceosomal protein DIB1, putative. (131 aa)
	RCOM_0523630	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	RCOM_1178310	Small nuclear ribonucleoprotein Sm D2. (169 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	RCOM_1515770	XRCC1_N domain-containing protein. (109 aa)
	RCOM_0222550	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	RCOM_0745870	DUF1115 domain-containing protein. (102 aa)
	RCOM_0745880	U4/U6 small nuclear ribonucleoprotein Prp3, putative. (483 aa)
	RCOM_0527090	U4/U6 small nuclear ribonucleoprotein Prp31, putative. (774 aa)
	RCOM_1148620	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	RCOM_0626720	Mitosis protein dim1, putative. (142 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM8	B9T2G3	B9SCZ8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	RCOM_0128050	B9T2G3	B9SVV2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP1_N domain-containing protein.	0.890
LSM3	RCOM_0151030	B9T2G3	B9T839	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein f, putative.	0.999
LSM3	RCOM_0222550	B9T2G3	B9SEQ9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.954
LSM3	RCOM_0255520	B9T2G3	B9SVT1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein Prp4, putative.	0.977
LSM3	RCOM_0404830	B9T2G3	B9T2C6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.924
LSM3	RCOM_0510040	B9T2G3	B9T2N2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	116 kD U5 small nuclear ribonucleoprotein component, putative.	0.976
LSM3	RCOM_0523630	B9T2G3	B9S9Y9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
LSM3	RCOM_0527090	B9T2G3	B9SH73	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein Prp31, putative.	0.979
LSM3	RCOM_0557340	B9T2G3	B9S407	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Potassium channel regulatory factor, putative.	0.773
LSM3	RCOM_0626720	B9T2G3	B9SUQ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Mitosis protein dim1, putative.	0.947
LSM3	RCOM_0729670	B9T2G3	B9T0H9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
LSM3	RCOM_0745870	B9T2G3	B9SGG7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DUF1115 domain-containing protein.	0.924
LSM3	RCOM_0745880	B9T2G3	B9SGG8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein Prp3, putative.	0.945
LSM3	RCOM_0771080	B9T2G3	B9SV77	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.972
LSM3	RCOM_0771300	B9T2G3	B9SV79	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.972
LSM3	RCOM_0800560	B9T2G3	B9RRZ7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.959
LSM3	RCOM_0986580	B9T2G3	B9SY41	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Mitosis protein dim1, putative.	0.947
LSM3	RCOM_1148620	B9T2G3	B9SNF9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.994
LSM3	RCOM_1175540	B9T2G3	B9RW28	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA splicing factor, putative.	0.947