38 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1510750	Exosome complex exonuclease RRP40, putative. (234 aa)
	RCOM_1683300	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1475 aa)
	RCOM_1609680	Ccr4-not transcription complex, putative. (2330 aa)
	RCOM_1612650	Poly(A) polymerase cid, putative. (696 aa)
	RCOM_1573690	Pumilio, putative. (1004 aa)
	RCOM_1575880	Yth domain-containing protein, putative. (636 aa)
	RCOM_1576440	Uncharacterized protein. (809 aa)
	RCOM_1576470	Uncharacterized protein. (777 aa)
	RCOM_1031510	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	RCOM_1079900	Yth domain-containing protein, putative. (595 aa)
	RCOM_0921770	Ccr4-associated factor, putative. (274 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	RCOM_1129090	Yth domain-containing protein, putative. (575 aa)
	RCOM_1002710	Yth domain-containing protein, putative. (706 aa)
	RCOM_0673440	Uncharacterized protein. (739 aa)
	RCOM_0993080	Ccr4-associated factor, putative. (161 aa)
	RCOM_0610380	DNA-directed RNA polymerase II, putative. (138 aa)
	RCOM_1336800	Uncharacterized protein. (970 aa)
	RCOM_1282050	mRNA decapping enzyme 1A, putative. (210 aa)
	RCOM_1282470	Ccr4-associated factor, putative. (281 aa)
	RCOM_0647870	Rrp4, putative. (322 aa)
	RCOM_1121720	Yth domain-containing protein, putative. (677 aa)
	RCOM_1121820	Uncharacterized protein. (889 aa)
	RCOM_1004470	Yth domain-containing protein, putative. (559 aa)
	RCOM_0759470	Yth domain-containing protein, putative. (582 aa)
	RCOM_0470900	Ccr4-associated factor, putative. (274 aa)
	RCOM_0225810	Ccr4-associated factor, putative. (292 aa)
	RCOM_0347880	Exosome complex exonuclease rrp42, putative. (287 aa)
	RCOM_0327460	CCR4-NOT transcription complex subunit, putative. (664 aa)
	RCOM_1259240	Uncharacterized protein. (366 aa)
	RCOM_0063290	Exosome complex exonuclease rrp45, putative. (463 aa)
	RCOM_0041430	Carbon catabolite repressor protein, putative. (603 aa)
	RCOM_0374000	Exosome complex exonuclease rrp43, putative. (303 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	RCOM_0026480	Nudix hydrolase domain-containing protein. (316 aa)
	RCOM_0444530	Ccr4-associated factor, putative. (294 aa)
	RCOM_0151030	Small nuclear ribonucleoprotein f, putative. (91 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM1-2	B9RR81	B9T3A8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.900
LSM1	LSM3	B9RR81	B9T2G3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1	RCOM_0026480	B9RR81	B9T3D6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Nudix hydrolase domain-containing protein.	0.937
LSM1	RCOM_0151030	B9RR81	B9T839	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.978
LSM1	RCOM_1259240	B9RR81	B9SX11	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.812
LSM1	RCOM_1282050	B9RR81	B9SCX2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA decapping enzyme 1A, putative.	0.812
LSM1	RCOM_1609680	B9RR81	B9RD55	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Ccr4-not transcription complex, putative.	0.533
LSM1	RCOM_1612650	B9RR81	B9RDG6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Poly(A) polymerase cid, putative.	0.521
LSM1-2	LSM1	B9T3A8	B9RR81	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.900
LSM1-2	LSM3	B9T3A8	B9T2G3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1-2	RCOM_0026480	B9T3A8	B9T3D6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Nudix hydrolase domain-containing protein.	0.937
LSM1-2	RCOM_0151030	B9T3A8	B9T839	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.978
LSM1-2	RCOM_1259240	B9T3A8	B9SX11	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.812
LSM1-2	RCOM_1282050	B9T3A8	B9SCX2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA decapping enzyme 1A, putative.	0.812
LSM1-2	RCOM_1609680	B9T3A8	B9RD55	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Ccr4-not transcription complex, putative.	0.533
LSM1-2	RCOM_1612650	B9T3A8	B9RDG6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Poly(A) polymerase cid, putative.	0.526
LSM3	LSM1	B9T2G3	B9RR81	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.991
LSM3	LSM1-2	B9T2G3	B9T3A8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.991
LSM3	RCOM_0026480	B9T2G3	B9T3D6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.932
LSM3	RCOM_0151030	B9T2G3	B9T839	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein f, putative.	0.999