55 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1600990	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)
	RCOM_1602810	ATP-dependent RNA helicase, putative. (1177 aa)
	RCOM_1503520	Nucleotide binding protein, putative. (752 aa)
	RCOM_1691080	Crooked neck protein, putative. (696 aa)
	RCOM_1612480	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (217 aa)
	RCOM_1453220	Uncharacterized protein. (1492 aa)
	RCOM_1469330	Uncharacterized protein. (1566 aa)
	RCOM_0706290	Peptidyl-prolyl cis-trans isomerase, putative. (493 aa)
	RCOM_0681440	PP1/PP2A phosphatases pleiotropic regulator PRL1, putative. (415 aa)
	RCOM_0851900	Small nuclear ribonucleoprotein f, putative. (62 aa)
	RCOM_0900710	Pre-mRNA-processing-splicing factor, putative. (2376 aa)
	RCOM_1175540	Pre-mRNA splicing factor, putative. (1031 aa)
	RCOM_0816780	Uncharacterized protein. (158 aa)
	RCOM_0902840	Uncharacterized protein. (430 aa)
	RCOM_0935200	Splicing factor 3B subunit, putative. (590 aa)
	RCOM_1353370	Splicing factor 3A subunit, putative. (327 aa)
	RCOM_0730620	RNA binding motif protein, putative. (285 aa)
	RCOM_1553780	Pre-mRNA-splicing factor isy-1, putative. (302 aa)
	RCOM_0558720	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	RCOM_0807900	Dead box ATP-dependent RNA helicase, putative. (407 aa)
	RCOM_0979410	Pre-mRNA-splicing factor syf2, putative. (308 aa)
	RCOM_1063020	XPA-binding protein, putative. (916 aa)
	RCOM_1331440	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (714 aa)
	RCOM_0523340	Pre-mRNA-splicing factor cwc15, putative. (230 aa)
	RCOM_1178310	Small nuclear ribonucleoprotein Sm D2. (169 aa)
	RCOM_1480080	WD_REPEATS_REGION domain-containing protein. (212 aa)
	RCOM_0723330	WD-repeat protein, putative. (345 aa)
	RCOM_0580330	Cyclophilin-10, putative. (599 aa)
	RCOM_0528950	Pre-mRNA splicing factor prp17, putative. (437 aa)
	RCOM_0821880	Splicing factor 3B subunit, putative. (1233 aa)
	RCOM_0597470	Nucleic acid binding protein, putative. (693 aa)
	RCOM_1148620	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	RCOM_1183360	Pinn, putative. (384 aa)
	RCOM_0112090	Spliceosome associated protein, putative. (816 aa)
	RCOM_0792840	WD-repeat protein, putative. (623 aa)
	RCOM_0572020	Breast carcinoma amplified sequence, putative. (237 aa)
	RCOM_0771080	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_0771300	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_0009450	WD-repeat protein, putative. (241 aa)
	RCOM_0128050	PRP1_N domain-containing protein. (78 aa)
	RCOM_0293010	Small nuclear ribonucleoprotein G. (80 aa)
	RCOM_0293260	Uncharacterized protein. (87 aa)
	RCOM_0488810	Cell cycle control protein cwf22, putative. (810 aa)
	RCOM_1259280	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	RCOM_0017870	Small nuclear ribonucleoprotein f, putative. (88 aa)
	RCOM_0974800	Pre-mRNA branch site protein p14, putative. (124 aa)
	RCOM_1206810	Uncharacterized protein. (69 aa)
	RCOM_0060330	Uncharacterized protein. (154 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	RCOM_0510040	116 kD U5 small nuclear ribonucleoprotein component, putative. (992 aa)
	RCOM_0050440	ATP-dependent RNA helicase, putative. (1031 aa)
	RCOM_1120390	Uncharacterized protein. (519 aa)
	RCOM_2143920	Dead box ATP-dependent RNA helicase, putative. (135 aa)
	RCOM_0329900	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (206 aa)
	RCOM_2148830	Dead box ATP-dependent RNA helicase, putative. (184 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	RCOM_0017870	B9T2G3	B9SXM7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein f, putative.	0.977
LSM3	RCOM_0112090	B9T2G3	B9SR88	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosome associated protein, putative.	0.828
LSM3	RCOM_0128050	B9T2G3	B9SVV2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP1_N domain-containing protein.	0.890
LSM3	RCOM_0293010	B9T2G3	B9SWG3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.995
LSM3	RCOM_0293260	B9T2G3	B9SWG7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.846
LSM3	RCOM_0510040	B9T2G3	B9T2N2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	116 kD U5 small nuclear ribonucleoprotein component, putative.	0.976
LSM3	RCOM_0523340	B9T2G3	B9S9Y0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor cwc15, putative.	0.785
LSM3	RCOM_0558720	B9T2G3	B9S445	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.992
LSM3	RCOM_0723330	B9T2G3	B9SFU6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD-repeat protein, putative.	0.626
LSM3	RCOM_0730620	B9T2G3	B9S369	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA binding motif protein, putative.	0.501
LSM3	RCOM_0771080	B9T2G3	B9SV77	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.972
LSM3	RCOM_0771300	B9T2G3	B9SV79	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.972
LSM3	RCOM_0807900	B9T2G3	B9S4I6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Dead box ATP-dependent RNA helicase, putative.	0.413
LSM3	RCOM_0816780	B9T2G3	B9RX27	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.888
LSM3	RCOM_0821880	B9T2G3	B9SIK7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit, putative.	0.872
LSM3	RCOM_0851900	B9T2G3	B9RUD7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein f, putative.	0.977
LSM3	RCOM_0900710	B9T2G3	B9RV85	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor, putative.	0.957
LSM3	RCOM_0902840	B9T2G3	B9RXD7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.828
LSM3	RCOM_0935200	B9T2G3	B9RZ56	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit, putative.	0.846
LSM3	RCOM_0974800	B9T2G3	B9SXX1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA branch site protein p14, putative.	0.834