(36 nodes) LSM domain superfamily network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0631300	Sm domain-containing protein. (118 aa)
	RCOM_1616270	Uncharacterized protein. (490 aa)
	RCOM_1433350	Uncharacterized protein. (107 aa)
	RCOM_1524640	Sm domain-containing protein. (99 aa)
	RCOM_1039450	Uncharacterized protein. (705 aa)
	RCOM_1045950	Mechanosensitive ion channel protein. (753 aa)
	RCOM_1045960	Uncharacterized protein. (605 aa)
	RCOM_1045970	Uncharacterized protein. (585 aa)
	RCOM_0706730	Mechanosensitive ion channel protein. (762 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	RCOM_0851900	Small nuclear ribonucleoprotein f, putative. (62 aa)
	RCOM_0865730	Uncharacterized protein. (290 aa)
	RCOM_0867840	Uncharacterized protein. (600 aa)
	RCOM_0558720	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	RCOM_0523630	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
	RCOM_1178310	Small nuclear ribonucleoprotein Sm D2. (169 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	RCOM_1516710	Mechanosensitive ion channel protein. (698 aa)
	RCOM_0704510	Protein binding protein, putative. (665 aa)
	RCOM_0107500	Uncharacterized protein. (709 aa)
	RCOM_0648390	Speckle-type POZ protein, putative. (500 aa)
	RCOM_0597110	Uncharacterized protein. (576 aa)
	RCOM_1148620	Small nuclear ribonucleoprotein Sm D2. (103 aa)
	RCOM_0771080	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_0293010	Small nuclear ribonucleoprotein G. (80 aa)
	RCOM_0017870	Small nuclear ribonucleoprotein f, putative. (88 aa)
	RCOM_0729670	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	RCOM_1054840	Uncharacterized protein. (654 aa)
	RCOM_0151030	Small nuclear ribonucleoprotein f, putative. (91 aa)
	RCOM_1864320	Uncharacterized protein. (302 aa)
	RCOM_2144820	Small-conductance mechanosensitive channel, putative. (143 aa)
	RCOM_0771300	Small nuclear ribonucleoprotein-associated protein. (275 aa)
	RCOM_1600990	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM1-2	B9RR81	B9T3A8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.900
LSM1	LSM3	B9RR81	B9T2G3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1	LSM4	B9RR81	B9SAP2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
LSM1	LSM8	B9RR81	B9SCZ8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.944
LSM1	RCOM_0017870	B9RR81	B9SXM7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.629
LSM1	RCOM_0151030	B9RR81	B9T839	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.978
LSM1	RCOM_0293010	B9RR81	B9SWG3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein G.	0.597
LSM1	RCOM_0523630	B9RR81	B9S9Y9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.642
LSM1	RCOM_0558720	B9RR81	B9S445	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.621
LSM1	RCOM_0597110	B9RR81	B9SIZ7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.417
LSM1	RCOM_0704510	B9RR81	B9SEH0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Protein binding protein, putative.	0.417
LSM1	RCOM_0729670	B9RR81	B9T0H9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.642
LSM1	RCOM_0771080	B9RR81	B9SV77	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein-associated protein.	0.482
LSM1	RCOM_0771300	B9RR81	B9SV79	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein-associated protein.	0.482
LSM1	RCOM_0851900	B9RR81	B9RUD7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.629
LSM1	RCOM_0867840	B9RR81	B9S1S4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.417
LSM1	RCOM_1148620	B9RR81	B9SNF9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein Sm D2.	0.575
LSM1	RCOM_1178310	B9RR81	B9SAR8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein Sm D2.	0.575
LSM1	RCOM_1433350	B9RR81	B9RFB4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.966
LSM1	RCOM_1524640	B9RR81	B9RHF7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Sm domain-containing protein.	0.989