128 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1173010	Uncharacterized protein. (140 aa)
	RCOM_1307020	S1 motif domain-containing protein. (365 aa)
	RCOM_1002410	Tex protein-relatedtranscription accessory protein, putative. (412 aa)
	RCOM_1003800	Telo_bind domain-containing protein. (460 aa)
	RCOM_0633290	DNA helicase; Belongs to the MCM family. (769 aa)
	RCOM_0866490	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (901 aa)
	RCOM_0732550	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
	RCOM_0828800	DUF223 domain-containing protein. (101 aa)
	RCOM_0557150	Uncharacterized protein. (145 aa)
	RCOM_0558150	DNA ligase I, putative. (187 aa)
	RCOM_0558730	mRNA capping enzyme, putative. (653 aa)
	RCOM_0037190	Ribosomal protein S28, putative. (65 aa)
	RCOM_0690060	Methionyl-tRNA synthetase, putative. (391 aa)
	RCOM_0991710	Single-stranded DNA-binding protein, ssb, putative. (285 aa)
	RCOM_0992200	DNA-directed RNA polymerase III 25 kD polypeptide, putative. (194 aa)
	RCOM_1722300	26S protease regulatory subunit, putative. (399 aa)
	RCOM_0871200	30S ribosomal protein S17, putative. (92 aa)
	RCOM_0875030	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
	RCOM_0610390	Bulb-type lectin domain-containing protein. (593 aa)
	RCOM_1382360	Uncharacterized protein. (191 aa)
	RCOM_1382380	Aspartyl-tRNA synthetase, putative. (668 aa)
	RCOM_1383430	Aspartyl-tRNA synthetase, putative. (328 aa)
	RCOM_0884250	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
	RCOM_0343090	Lysine--tRNA ligase. (585 aa)
	RCOM_1043210	Aspartyl-tRNA synthetase, putative. (540 aa)
	RCOM_0701490	DNA helicase; Belongs to the MCM family. (723 aa)
	rpl2	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (290 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (117 aa)
	RCOM_2029530	NfeD domain-containing protein. (100 aa)
	RCOM_2016290	Uncharacterized protein. (117 aa)
	RCOM_1889120	NfeD domain-containing protein. (140 aa)
	RCOM_1831550	Cold shock domain containing proteins, putative. (67 aa)
	RCOM_1942910	S1 motif domain-containing protein. (97 aa)
	RCOM_1946500	Phenylalanyl-tRNA synthetase beta chain, putative. (381 aa)
	RCOM_1839880	DNA_ligase_OB_2 domain-containing protein. (84 aa)
	RCOM_1881670	tRNA-binding domain-containing protein. (260 aa)
	RCOM_1962080	S1 motif domain-containing protein. (109 aa)
	RCOM_1900460	Single-stranded DNA-binding protein, ssb, putative. (152 aa)
	RCOM_1819360	DNA ligase, NAD-dependent, putative. (491 aa)
	RCOM_1957910	Transcription termination factor rho, putative. (435 aa)
	RCOM_1932060	Phenylalanyl-tRNA synthetase beta chain, putative. (608 aa)
	RCOM_0053280	DNA_LIGASE_A3 domain-containing protein. (841 aa)
	RCOM_0450990	Ribonuclease G, putative. (436 aa)
	RCOM_0334010	Phenylalanyl-tRNA synthetase beta chain, putative. (421 aa)
	RCOM_2144620	Elongation factor P, putative. (216 aa)
	RCOM_0018500	Cold shock domain containing proteins, putative. (67 aa)
	RCOM_0133060	DNA helicase; Belongs to the MCM family. (713 aa)
	RCOM_0313610	Ribonuclease II, putative. (731 aa)
	RCOM_0431020	Cellular nucleic acid binding protein, putative. (266 aa)
	RCOM_0237690	Cold shock protein, putative. (257 aa)
	RCOM_0050440	ATP-dependent RNA helicase, putative. (1031 aa)
	RCOM_0082070	Rep-A_N domain-containing protein. (99 aa)
	RCOM_0510080	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	RCOM_0036510	Programmed cell death protein, putative. (1330 aa)
	RCOM_0036500	Programmed cell death protein, putative. (607 aa)
	RCOM_0494110	Eukaryotic translation initiation factor, putative. (344 aa)
	RCOM_0435350	Lysine--tRNA ligase. (607 aa)
	RCOM_0490610	Zf-primase domain-containing protein. (348 aa)
	RCOM_0566130	Telo_bind domain-containing protein. (449 aa)
	RCOM_0892300	Uncharacterized protein. (661 aa)
	RCOM_1270490	26S protease regulatory subunit 6b, putative; Belongs to the AAA ATPase family. (415 aa)
	RCOM_0473910	Rep_fac-A_C domain-containing protein. (157 aa)
	RCOM_0474620	DNA ligase. (737 aa)
	RCOM_0819610	40S ribosomal protein S23, putative; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	RCOM_1700760	Suppressor of ty, putative. (1650 aa)
	RCOM_1213430	CBM20 domain-containing protein. (963 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_0646320	OB domain-containing protein. (166 aa)
	RCOM_0647870	Rrp4, putative. (322 aa)
	RCOM_0819460	Mitochondrial 60S ribosomal protein L2, putative. (312 aa)
	RCOM_0819630	DNA replication licensing factor MCM8, putative; Belongs to the MCM family. (757 aa)
	RCOM_0528470	Uncharacterized protein. (136 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_0821870	Minichromosome maintenance protein MCM, putative; Belongs to the MCM family. (644 aa)
	RCOM_0843050	Uncharacterized protein. (983 aa)
	RCOM_1629040	26S protease regulatory subunit, putative; Belongs to the AAA ATPase family. (443 aa)
	RCOM_0720440	60S ribosomal protein L8, putative. (261 aa)
	RCOM_0658740	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	RCOM_0847980	Breast cancer type 2 susceptibility protein brca2, putative. (1156 aa)
	RCOM_0296330	Uncharacterized protein. (476 aa)
	RCOM_1185630	Uncharacterized protein. (103 aa)
	RCOM_0440480	DNA ligase IV, putative. (850 aa)
	RCOM_0085060	mRNA capping enzyme, putative. (598 aa)
	RCOM_0204880	Replication protein A 30 kDa subunit, putative. (242 aa)
	RCOM_1100620	Uncharacterized protein. (119 aa)
	RCOM_0466830	DNA ligase. (1360 aa)
	RCOM_1057620	Elongation factor P, putative. (114 aa)
	RCOM_0510890	Eif-1a, putative; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (145 aa)
	RCOM_0364900	Methionyl-tRNA synthetase, putative. (258 aa)
	RCOM_1318760	Single-stranded DNA-binding protein, mitochondrial, putative. (213 aa)
	RCOM_0826390	26S protease regulatory subunit, putative; Belongs to the AAA ATPase family. (382 aa)
	RCOM_0622740	Eukaryotic translation initiation factor 5A. (160 aa)
	RCOM_1716580	Uncharacterized protein. (218 aa)
	RCOM_1204830	DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	RCOM_0292840	Uncharacterized protein. (108 aa)
	RCOM_1591960	Uncharacterized protein. (378 aa)
	RCOM_1595710	26S protease regulatory subunit S10b, putative; Belongs to the AAA ATPase family. (399 aa)
	RCOM_1595720	26S protease regulatory subunit S10b, putative; Belongs to the AAA ATPase family. (399 aa)
	RCOM_1597240	S1 motif domain-containing protein. (229 aa)
	RCOM_1602810	ATP-dependent RNA helicase, putative. (1177 aa)
	RCOM_1507070	S1 motif domain-containing protein. (501 aa)
	RCOM_1510750	Exosome complex exonuclease RRP40, putative. (234 aa)
	RCOM_1673610	Uncharacterized protein. (150 aa)
	RCOM_1686120	S1 motif domain-containing protein. (748 aa)
	RCOM_1622080	Initiation factor 5a, putative. (509 aa)
	RCOM_1618400	Single-stranded DNA-binding protein, mitochondrial, putative. (223 aa)
	RCOM_1433380	26S protease regulatory subunit 6a, putative; Belongs to the AAA ATPase family. (429 aa)
	RCOM_1434160	Uncharacterized protein. (125 aa)
	RCOM_1438760	DNA helicase; Belongs to the MCM family. (930 aa)
	RCOM_1449150	DNA helicase; Belongs to the MCM family. (867 aa)
	RCOM_1577350	Uncharacterized protein. (254 aa)
	RCOM_1031420	Cold shock protein, putative. (184 aa)
	RCOM_1031510	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
	RCOM_1031520	Uncharacterized protein. (308 aa)
	RCOM_1045930	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (670 aa)
	RCOM_1048380	Asparagine--tRNA ligase, putative. (155 aa)
	EFTS	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (972 aa)
	RCOM_1469680	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (622 aa)
	RCOM_1471000	Eukaryotic translation initiation factor 5A. (160 aa)
	RCOM_1080720	GTP binding protein, putative. (500 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (718 aa)
	RCOM_1544580	60S ribosomal protein L8, putative. (261 aa)
	RCOM_1486130	RNA m5u methyltransferase, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (577 aa)
	RCOM_1493770	30S ribosomal protein S17, putative; Belongs to the universal ribosomal protein uS17 family. (152 aa)
	RCOM_0708270	26S protease regulatory subunit, putative; Belongs to the AAA ATPase family. (430 aa)
	RCOM_0913800	Protein C9orf114, putative. (369 aa)
	RCOM_1135570	Uncharacterized protein. (52 aa)
	RCOM_1018310	Methionine-tRNA synthetase, putative; Belongs to the class-I aminoacyl-tRNA synthetase family. (678 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTS	RCOM_0036500	B9RKL9	B9T014	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Programmed cell death protein, putative.	0.829
EFTS	RCOM_0036510	B9RKL9	B9T015	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Programmed cell death protein, putative.	0.829
EFTS	RCOM_0296330	B9RKL9	B9SM67	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.829
EFTS	RCOM_0343090	B9RKL9	B9SBP3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Lysine--tRNA ligase.	0.633
EFTS	RCOM_0435350	B9RKL9	B9SY11	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Lysine--tRNA ligase.	0.633
EFTS	RCOM_0510080	B9RKL9	B9T2N6	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family.	0.797
EFTS	RCOM_0510890	B9RKL9	B9SSH7	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Eif-1a, putative; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.646
EFTS	RCOM_0622740	B9RKL9	B9STQ5	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Eukaryotic translation initiation factor 5A.	0.686
EFTS	RCOM_0658740	B9RKL9	B9SKG4	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family.	0.797
EFTS	RCOM_0720440	B9RKL9	B9SK07	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	60S ribosomal protein L8, putative.	0.746
EFTS	RCOM_0819460	B9RKL9	B9SGQ7	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Mitochondrial 60S ribosomal protein L2, putative.	0.750
EFTS	RCOM_0819610	B9RKL9	B9SD33	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S23, putative; Belongs to the universal ribosomal protein uS12 family.	0.895
EFTS	RCOM_0871200	B9RKL9	B9S6P6	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	30S ribosomal protein S17, putative.	0.797
EFTS	RCOM_1002410	B9RKL9	B9RZW3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Tex protein-relatedtranscription accessory protein, putative.	0.829
EFTS	RCOM_1043210	B9RKL9	B9SBT1	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Aspartyl-tRNA synthetase, putative.	0.438
EFTS	RCOM_1048380	B9RKL9	B9RKD2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Asparagine--tRNA ligase, putative.	0.438
EFTS	RCOM_1057620	B9RKL9	B9SRS5	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Elongation factor P, putative.	0.765
EFTS	RCOM_1095710	B9RKL9	B9SFA0	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative.	0.599
EFTS	RCOM_1307020	B9RKL9	B9RY10	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	S1 motif domain-containing protein.	0.829
EFTS	RCOM_1321070	B9RKL9	B9SI65	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative.	0.655