(37 nodes) Ribosomal protein S5 domain 2-type fold, subgroup network (Ricinus communis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1563630	Galactokinase, putative. (431 aa)
	RCOM_1582880	Ribosomal protein S9, putative. (398 aa)
	RCOM_1577790	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family. (270 aa)
	RCOM_1577470	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family. (273 aa)
	RCOM_1001220	Galactokinase, putative. (499 aa)
	RCOM_0812680	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family. (151 aa)
	RCOM_1173940	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (699 aa)
	RCOM_0966810	DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1212 aa)
	RCOM_0902180	Homoserine kinase, putative. (367 aa)
	RCOM_1010470	Uncharacterized protein. (125 aa)
	RCOM_1517490	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family. (502 aa)
	RCOM_1068970	Eukaryotic translation elongation factor, putative. (843 aa)
	RCOM_0784670	4-diphosphocytidyl-2-C-methyl-d-erythritol kinase, putative. (388 aa)
	RCOM_1177300	DNA mismatch repair protein pms2, putative. (924 aa)
	RCOM_0692980	DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (732 aa)
	RCOM_1331420	DNA mismatch repair protein mlh1, putative. (735 aa)
	RCOM_0874490	Uncharacterized protein. (1137 aa)
	RCOM_0888230	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (415 aa)
	RCOM_0699810	ATP binding protein, putative. (503 aa)
	RCOM_0205340	Galactokinase, putative. (978 aa)
	RCOM_0520240	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (890 aa)
	RCOM_0573350	Mevalonate kinase. (386 aa)
	RCOM_0510040	116 kD U5 small nuclear ribonucleoprotein component, putative. (992 aa)
	RCOM_0334350	Uncharacterized protein. (77 aa)
	RCOM_2045220	Uncharacterized protein. (206 aa)
	RCOM_2070380	Galactokinase, putative. (295 aa)
	RCOM_1593360	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family. (200 aa)
	RCOM_1674110	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family. (309 aa)
	RCOM_1679710	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (789 aa)
	RCOM_1431350	Mevalonate kinase. (386 aa)
	RCOM_1435030	ATP binding protein, putative; Belongs to the peptidase S16 family. (680 aa)
	RCOM_1575900	Eukaryotic translation elongation factor, putative. (843 aa)
	TOP6B	DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (656 aa)
	RCOM_1487740	Uncharacterized protein. (195 aa)
	RCOM_1548160	Translation elongation factor, putative. (1028 aa)
	RCOM_1346810	Uncharacterized protein. (91 aa)
	RCOM_0497330	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family. (152 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0497330	RCOM_0510040	B9SPD6	B9T2N2	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	116 kD U5 small nuclear ribonucleoprotein component, putative.	0.795
RCOM_0497330	RCOM_0812680	B9SPD6	B9RYF4	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	0.900
RCOM_0497330	RCOM_1068970	B9SPD6	B9SD38	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Eukaryotic translation elongation factor, putative.	0.930
RCOM_0497330	RCOM_1173940	B9SPD6	B9RVY0	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.780
RCOM_0497330	RCOM_1517490	B9SPD6	B9SDG2	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family.	0.877
RCOM_0497330	RCOM_1548160	B9SPD6	B9RPP6	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Translation elongation factor, putative.	0.780
RCOM_0497330	RCOM_1575900	B9SPD6	B9RI35	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Eukaryotic translation elongation factor, putative.	0.930
RCOM_0497330	RCOM_1577470	B9SPD6	B9RIB2	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.976
RCOM_0497330	RCOM_1577790	B9SPD6	B9RIC4	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.976
RCOM_0497330	RCOM_1582880	B9SPD6	B9RIU9	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S9, putative.	0.899
RCOM_0497330	RCOM_1593360	B9SPD6	B9R7N5	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	0.899
RCOM_0497330	RCOM_1674110	B9SPD6	B9RBC3	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family.	0.949
RCOM_0497330	RCOM_1679710	B9SPD6	B9RBP7	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.780
RCOM_0510040	RCOM_0497330	B9T2N2	B9SPD6	116 kD U5 small nuclear ribonucleoprotein component, putative.	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	0.795
RCOM_0510040	RCOM_0812680	B9T2N2	B9RYF4	116 kD U5 small nuclear ribonucleoprotein component, putative.	Ribosomal protein S9, putative; Belongs to the universal ribosomal protein uS9 family.	0.795
RCOM_0510040	RCOM_1346810	B9T2N2	B9RNC9	116 kD U5 small nuclear ribonucleoprotein component, putative.	Uncharacterized protein.	0.795
RCOM_0510040	RCOM_1517490	B9T2N2	B9SDG2	116 kD U5 small nuclear ribonucleoprotein component, putative.	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family.	0.799
RCOM_0510040	RCOM_1577470	B9T2N2	B9RIB2	116 kD U5 small nuclear ribonucleoprotein component, putative.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.799
RCOM_0510040	RCOM_1577790	B9T2N2	B9RIC4	116 kD U5 small nuclear ribonucleoprotein component, putative.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.799
RCOM_0510040	RCOM_1582880	B9T2N2	B9RIU9	116 kD U5 small nuclear ribonucleoprotein component, putative.	Ribosomal protein S9, putative.	0.872