(33 nodes) PUA-like superfamily network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_2009430	Histone-lysine n-methyltransferase, suvh, putative. (274 aa)
	RCOM_1595980	ATP-dependent peptidase, putative. (283 aa)
	RCOM_1597370	Sulfate adenylyltransferase, putative. (425 aa)
	RCOM_1499130	Zinc finger protein, putative. (298 aa)
	RCOM_1502470	Histone-lysine n-methyltransferase, suvh, putative. (631 aa)
	RCOM_1502480	Histone-lysine n-methyltransferase, suvh, putative. (614 aa)
	RCOM_1433890	60S ribosomal protein L18, putative. (403 aa)
	RCOM_1435030	ATP binding protein, putative; Belongs to the peptidase S16 family. (680 aa)
	RCOM_1438390	Zinc finger protein, putative. (735 aa)
	RCOM_1445080	Histone-lysine n-methyltransferase, suvh, putative. (640 aa)
	RCOM_1471070	Kinase, putative. (1646 aa)
	RCOM_1426860	RNA binding protein, putative. (436 aa)
	RCOM_0801570	ATP-dependent peptidase, putative. (550 aa)
	RCOM_0680810	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	RCOM_0910820	Sulfate adenylyltransferase, putative. (460 aa)
	RCOM_1331450	ATP-dependent peptidase, putative. (313 aa)
	RCOM_0608880	ASCH domain-containing protein. (328 aa)
	RCOM_1383260	EVE domain-containing protein. (150 aa)
	RCOM_1383270	Uncharacterized protein. (290 aa)
	RCOM_0344440	Centromere/microtubule binding protein cbf5, putative. (581 aa)
	RCOM_0344550	Centromere/microtubule binding protein cbf5, putative. (432 aa)
	RCOM_1045170	Ligatin, putative. (616 aa)
	RCOM_0622490	Histone-lysine n-methyltransferase, suvh, putative. (681 aa)
	RCOM_1102310	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (586 aa)
	RCOM_1216590	Histone-lysine n-methyltransferase, suvh, putative. (364 aa)
	RCOM_0520240	Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (890 aa)
	RCOM_0571480	Zinc finger protein, putative. (752 aa)
	RCOM_0120900	Histone-lysine n-methyltransferase, suvh, putative. (455 aa)
	RCOM_1006990	ASCH domain-containing protein. (213 aa)
	RCOM_1205550	ASCH domain-containing protein. (370 aa)
	RCOM_1830060	EVE domain-containing protein. (104 aa)
	RCOM_2015350	EVE domain-containing protein. (153 aa)
	RCOM_1801240	PUA_3 domain-containing protein. (92 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0120900	RCOM_1502470	B9SZ00	B9RA03	Histone-lysine n-methyltransferase, suvh, putative.	Histone-lysine n-methyltransferase, suvh, putative.	0.903
RCOM_0120900	RCOM_1502480	B9SZ00	B9RA04	Histone-lysine n-methyltransferase, suvh, putative.	Histone-lysine n-methyltransferase, suvh, putative.	0.903
RCOM_0344440	RCOM_0344550	B9SBQ8	B9SBQ9	Centromere/microtubule binding protein cbf5, putative.	Centromere/microtubule binding protein cbf5, putative.	0.900
RCOM_0344440	RCOM_0680810	B9SBQ8	B9RT37	Centromere/microtubule binding protein cbf5, putative.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.522
RCOM_0344440	RCOM_1102310	B9SBQ8	B9SPX7	Centromere/microtubule binding protein cbf5, putative.	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.496
RCOM_0344550	RCOM_0344440	B9SBQ9	B9SBQ8	Centromere/microtubule binding protein cbf5, putative.	Centromere/microtubule binding protein cbf5, putative.	0.900
RCOM_0344550	RCOM_0680810	B9SBQ9	B9RT37	Centromere/microtubule binding protein cbf5, putative.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.522
RCOM_0344550	RCOM_1102310	B9SBQ9	B9SPX7	Centromere/microtubule binding protein cbf5, putative.	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.496
RCOM_0680810	RCOM_0344440	B9RT37	B9SBQ8	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Centromere/microtubule binding protein cbf5, putative.	0.522
RCOM_0680810	RCOM_0344550	B9RT37	B9SBQ9	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Centromere/microtubule binding protein cbf5, putative.	0.522
RCOM_0680810	RCOM_1102310	B9RT37	B9SPX7	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.964
RCOM_0680810	RCOM_1433890	B9RT37	B9RFD6	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	60S ribosomal protein L18, putative.	0.836
RCOM_0910820	RCOM_1597370	B9RTI9	B9R870	Sulfate adenylyltransferase, putative.	Sulfate adenylyltransferase, putative.	0.901
RCOM_1045170	RCOM_1426860	B9SBV7	B9RRQ3	Ligatin, putative.	RNA binding protein, putative.	0.731
RCOM_1102310	RCOM_0344440	B9SPX7	B9SBQ8	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Centromere/microtubule binding protein cbf5, putative.	0.496
RCOM_1102310	RCOM_0344550	B9SPX7	B9SBQ9	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Centromere/microtubule binding protein cbf5, putative.	0.496
RCOM_1102310	RCOM_0680810	B9SPX7	B9RT37	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.964
RCOM_1102310	RCOM_1383270	B9SPX7	B9S803	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.416
RCOM_1102310	RCOM_1433890	B9SPX7	B9RFD6	RNA binding protein, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	60S ribosomal protein L18, putative.	0.747
RCOM_1216590	RCOM_2009430	B9SQR3	B9TNP9	Histone-lysine n-methyltransferase, suvh, putative.	Histone-lysine n-methyltransferase, suvh, putative.	0.597