36 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1584760	Poly(RC)-binding protein, putative. (679 aa)
	RCOM_1500890	Zinc finger protein, putative. (798 aa)
	RCOM_1510750	Exosome complex exonuclease RRP40, putative. (234 aa)
	RCOM_1608840	Uncharacterized protein. (363 aa)
	RCOM_1575910	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (377 aa)
	RCOM_1492510	Nucleic acid binding protein, putative. (416 aa)
	RCOM_0798130	Nucleic acid binding protein, putative. (306 aa)
	RCOM_0798510	3'-5' exonuclease, putative. (342 aa)
	RCOM_1724820	Poly(RC)-binding protein, putative. (537 aa)
	RCOM_1705180	Poly(RC)-binding protein, putative. (451 aa)
	RCOM_0631290	Poly(RC)-binding protein, putative. (462 aa)
	RCOM_1385160	KH domain-containing protein. (161 aa)
	RCOM_0774000	RNA-binding protein Nova-1, putative. (544 aa)
	RCOM_0641960	Nucleic acid binding protein, putative. (704 aa)
	RCOM_0607560	Poly(RC)-binding protein, putative. (548 aa)
	RCOM_0837270	Nucleic acid binding protein, putative. (559 aa)
	RCOM_0886780	Poly(RC)-binding protein, putative. (698 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_0647870	Rrp4, putative. (322 aa)
	RCOM_0742410	Nucleic acid binding protein, putative. (798 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_0758190	Nucleic acid binding protein, putative. (295 aa)
	RCOM_1024860	Uncharacterized protein. (586 aa)
	RCOM_0205000	Poly(RC)-binding protein, putative. (416 aa)
	RCOM_0267590	Nucleic acid binding protein, putative. (218 aa)
	RCOM_1455570	Protein binding protein, putative. (838 aa)
	RCOM_0012670	KH domain-containing protein. (122 aa)
	RCOM_0126290	KH domain-containing protein. (680 aa)
	RCOM_0410480	Nucleic acid binding protein, putative. (688 aa)
	RCOM_0350300	Far upstream element-binding protein, putative. (314 aa)
	RCOM_0169850	Nucleic acid binding protein, putative. (300 aa)
	RCOM_0299620	Poly(RC)-binding protein, putative. (405 aa)
	RCOM_1113660	Nucleic acid binding protein, putative. (274 aa)
	RCOM_0098170	Uncharacterized protein. (295 aa)
	RCOM_0098280	Uncharacterized protein. (295 aa)
	RCOM_0252120	Uncharacterized protein. (51 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0098170	RCOM_0647870	B9T5D8	B9SFN0	Uncharacterized protein.	Rrp4, putative.	0.412
RCOM_0098280	RCOM_0647870	B9T5D9	B9SFN0	Uncharacterized protein.	Rrp4, putative.	0.412
RCOM_0267590	RCOM_0647870	B9SX96	B9SFN0	Nucleic acid binding protein, putative.	Rrp4, putative.	0.760
RCOM_0267590	RCOM_1510750	B9SX96	B9RB31	Nucleic acid binding protein, putative.	Exosome complex exonuclease RRP40, putative.	0.759
RCOM_0267590	RCOM_1575910	B9SX96	B9RI36	Nucleic acid binding protein, putative.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.987
RCOM_0350300	RCOM_1455570	B9T303	B9SY02	Far upstream element-binding protein, putative.	Protein binding protein, putative.	0.499
RCOM_0350300	RCOM_1500890	B9T303	B9R9V5	Far upstream element-binding protein, putative.	Zinc finger protein, putative.	0.499
RCOM_0607560	RCOM_1024860	B9S7H6	B9SNP3	Poly(RC)-binding protein, putative.	Uncharacterized protein.	0.410
RCOM_0631290	RCOM_0742410	B9S0X9	B9SHQ3	Poly(RC)-binding protein, putative.	Nucleic acid binding protein, putative.	0.448
RCOM_0641960	RCOM_0742410	B9S7G5	B9SHQ3	Nucleic acid binding protein, putative.	Nucleic acid binding protein, putative.	0.409
RCOM_0647870	RCOM_0098170	B9SFN0	B9T5D8	Rrp4, putative.	Uncharacterized protein.	0.412
RCOM_0647870	RCOM_0098280	B9SFN0	B9T5D9	Rrp4, putative.	Uncharacterized protein.	0.412
RCOM_0647870	RCOM_0267590	B9SFN0	B9SX96	Rrp4, putative.	Nucleic acid binding protein, putative.	0.760
RCOM_0647870	RCOM_0742410	B9SFN0	B9SHQ3	Rrp4, putative.	Nucleic acid binding protein, putative.	0.462
RCOM_0647870	RCOM_0774000	B9SFN0	B9S767	Rrp4, putative.	RNA-binding protein Nova-1, putative.	0.462
RCOM_0647870	RCOM_0798130	B9SFN0	B9RRU4	Rrp4, putative.	Nucleic acid binding protein, putative.	0.462
RCOM_0647870	RCOM_1095710	B9SFN0	B9SFA0	Rrp4, putative.	Polyribonucleotide nucleotidyltransferase, putative.	0.434
RCOM_0647870	RCOM_1321070	B9SFN0	B9SI65	Rrp4, putative.	Polyribonucleotide nucleotidyltransferase, putative.	0.434
RCOM_0647870	RCOM_1510750	B9SFN0	B9RB31	Rrp4, putative.	Exosome complex exonuclease RRP40, putative.	0.998
RCOM_0647870	RCOM_1575910	B9SFN0	B9RI36	Rrp4, putative.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.930