44 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	RCOM_1045930	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (670 aa)
	RCOM_1507690	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1025 aa)
	RCOM_1685440	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (333 aa)
	RCOM_1429050	Nucleotide binding protein, putative. (764 aa)
	RCOM_1757250	Uncharacterized protein. (150 aa)
	RCOM_1819360	DNA ligase, NAD-dependent, putative. (491 aa)
	RCOM_0160810	Replication factor C subunit, putative. (661 aa)
	RCOM_0082070	Rep-A_N domain-containing protein. (99 aa)
	RCOM_0260450	NAC domain-containing protein. (58 aa)
	RCOM_0792580	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2227 aa)
	RCOM_1091910	DNA repair protein xp-E, putative. (1033 aa)
	RCOM_1321180	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (342 aa)
	RCOM_0529210	Ubiquitin, putative. (156 aa)
	RCOM_1517510	Delta DNA polymerase, putative. (126 aa)
	RCOM_1282430	Transcription factor, putative. (387 aa)
	RCOM_1281670	DNA polymerase epsilon P17 subunit, putative. (157 aa)
	RCOM_0717620	Uncharacterized protein. (198 aa)
	RCOM_0717610	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (187 aa)
	RCOM_1251970	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1105 aa)
	RCOM_0535580	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (779 aa)
	RCOM_1064120	Cell division cycle protein cdt2, putative. (502 aa)
	RCOM_0757170	Transcription factor, putative. (597 aa)
	RCOM_1553240	NAC domain-containing protein. (134 aa)
	RCOM_0731080	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	RCOM_0563570	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (360 aa)
	RCOM_0562940	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (342 aa)
	RCOM_1032100	ATPase_AAA_core domain-containing protein. (1247 aa)
	RCOM_1326830	Transcription factor, putative. (256 aa)
	RCOM_1326820	Transcription factor, putative. (259 aa)
	RCOM_0866490	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (901 aa)
	RCOM_0632460	Cullin, putative; Belongs to the cullin family. (807 aa)
	RCOM_1298320	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1270 aa)
	RCOM_1314760	Transcription factor, putative. (615 aa)
	RCOM_1022970	Uncharacterized protein. (898 aa)
	RCOM_1344350	Ubiquitin, putative. (156 aa)
	RCOM_1341390	Uncharacterized protein. (408 aa)
	RCOM_1341380	NAC domain-containing protein. (377 aa)
	RCOM_1341240	Transcription factor, putative. (637 aa)
	RCOM_1340990	NAC domain-containing protein. (302 aa)
	RCOM_1340980	NAC domain-containing protein. (213 aa)
	RCOM_1340970	NAC domain-containing protein. (273 aa)
	RCOM_1340960	Transcription factor, putative. (612 aa)
	RCOM_1081880	F-box domain-containing protein. (182 aa)
	RCOM_1469680	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (622 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0082070	RCOM_0160810	B9T2T4	B9T608	Rep-A_N domain-containing protein.	Replication factor C subunit, putative.	0.413
RCOM_0082070	RCOM_0535580	B9T2T4	B9S6E2	Rep-A_N domain-containing protein.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.413
RCOM_0082070	RCOM_0563570	B9T2T4	B9S2X4	Rep-A_N domain-containing protein.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.471
RCOM_0082070	RCOM_0731080	B9T2T4	B9S374	Rep-A_N domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.721
RCOM_0082070	RCOM_0792580	B9T2T4	B9SSU6	Rep-A_N domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.500
RCOM_0082070	RCOM_1032100	B9T2T4	B9RJ79	Rep-A_N domain-containing protein.	ATPase_AAA_core domain-containing protein.	0.477
RCOM_0082070	RCOM_1321180	B9T2T4	B9SI66	Rep-A_N domain-containing protein.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.413
RCOM_0082070	RCOM_1685440	B9T2T4	B9RC55	Rep-A_N domain-containing protein.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.513
RCOM_0082070	RCOM_1757250	B9T2T4	B9RJ19	Rep-A_N domain-containing protein.	Uncharacterized protein.	0.477
RCOM_0082070	RCOM_1819360	B9T2T4	B9TDA3	Rep-A_N domain-containing protein.	DNA ligase, NAD-dependent, putative.	0.477
RCOM_0160810	RCOM_0082070	B9T608	B9T2T4	Replication factor C subunit, putative.	Rep-A_N domain-containing protein.	0.413
RCOM_0160810	RCOM_0260450	B9T608	B9SV35	Replication factor C subunit, putative.	NAC domain-containing protein.	0.413
RCOM_0160810	RCOM_0529210	B9T608	B9SHC5	Replication factor C subunit, putative.	Ubiquitin, putative.	0.596
RCOM_0160810	RCOM_0535580	B9T608	B9S6E2	Replication factor C subunit, putative.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.611
RCOM_0160810	RCOM_0562940	B9T608	B9S2W1	Replication factor C subunit, putative.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.951
RCOM_0160810	RCOM_0563570	B9T608	B9S2X4	Replication factor C subunit, putative.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.990
RCOM_0160810	RCOM_0717610	B9T608	B9SBG1	Replication factor C subunit, putative.	Replication factor C / DNA polymerase III gamma-tau subunit, putative.	0.898
RCOM_0160810	RCOM_0717620	B9T608	B9SBG2	Replication factor C subunit, putative.	Uncharacterized protein.	0.898
RCOM_0160810	RCOM_0731080	B9T608	B9S374	Replication factor C subunit, putative.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.987
RCOM_0160810	RCOM_0757170	B9T608	B9S5P3	Replication factor C subunit, putative.	Transcription factor, putative.	0.413