STRINGSTRING
RCOM_1491170 RCOM_1491170 RCOM_0706050 RCOM_0706050 LSM1 LSM1 RCOM_0799080 RCOM_0799080 RCOM_0800340 RCOM_0800340 RCOM_1728180 RCOM_1728180 RCOM_0909010 RCOM_0909010 RCOM_0913730 RCOM_0913730 RCOM_0852650 RCOM_0852650 RCOM_1176920 RCOM_1176920 RCOM_1282470 RCOM_1282470 RCOM_0699620 RCOM_0699620 RCOM_0730930 RCOM_0730930 RCOM_0993080 RCOM_0993080 RCOM_0654810 RCOM_0654810 RCOM_0654950 RCOM_0654950 RCOM_1064750 RCOM_1064750 RCOM_0875030 RCOM_0875030 RCOM_0610390 RCOM_0610390 RCOM_0522460 RCOM_0522460 LSM4 LSM4 RCOM_1338430 RCOM_1338430 RCOM_1282050 RCOM_1282050 RCOM_1602530 RCOM_1602530 RCOM_1512830 RCOM_1512830 RCOM_1510750 RCOM_1510750 RCOM_1511580 RCOM_1511580 RCOM_1685490 RCOM_1685490 RCOM_0151030 RCOM_0151030 RCOM_0313610 RCOM_0313610 RCOM_0452820 RCOM_0452820 RCOM_0444530 RCOM_0444530 RCOM_0026480 RCOM_0026480 LSM1-2 LSM1-2 LSM3 LSM3 RCOM_1158840 RCOM_1158840 RCOM_0374000 RCOM_0374000 RCOM_0272140 RCOM_0272140 RCOM_0063290 RCOM_0063290 RCOM_0267750 RCOM_0267750 RCOM_1259240 RCOM_1259240 RCOM_0490080 RCOM_0490080 RCOM_0327460 RCOM_0327460 RCOM_0347880 RCOM_0347880 RCOM_0225810 RCOM_0225810 RCOM_0034760 RCOM_0034760 RCOM_0033810 RCOM_0033810 RCOM_0752590 RCOM_0752590 RCOM_1016710 RCOM_1016710 RCOM_1016700 RCOM_1016700 RCOM_1016570 RCOM_1016570 RCOM_0204860 RCOM_0204860 RCOM_0470900 RCOM_0470900 RCOM_1627470 RCOM_1627470 RCOM_1627130 RCOM_1627130 RCOM_1121820 RCOM_1121820 RCOM_0820360 RCOM_0820360 RCOM_0819690 RCOM_0819690 RCOM_0647870 RCOM_0647870 RCOM_1095620 RCOM_1095620 RCOM_0959750 RCOM_0959750 RCOM_1481410 RCOM_1481410 RCOM_1609680 RCOM_1609680 RCOM_1612650 RCOM_1612650 RCOM_1614640 RCOM_1614640 RCOM_1433350 RCOM_1433350 RCOM_1524640 RCOM_1524640 RCOM_1031510 RCOM_1031510 RCOM_1047020 RCOM_1047020 RCOM_1047550 RCOM_1047550 RCOM_0921770 RCOM_0921770
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RCOM_1491170DNA binding protein, putative. (839 aa)
RCOM_0706050Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (333 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
RCOM_0799080Exosome complex exonuclease RRP46, putative. (211 aa)
RCOM_0800340DNA binding protein, putative. (782 aa)
RCOM_1728180Uncharacterized protein. (742 aa)
RCOM_0909010Uncharacterized protein. (773 aa)
RCOM_0913730Dead box ATP-dependent RNA helicase, putative. (476 aa)
RCOM_0852650Uncharacterized protein. (1009 aa)
RCOM_1176920Uncharacterized protein. (373 aa)
RCOM_1282470Ccr4-associated factor, putative. (281 aa)
RCOM_0699620Helicase, putative. (1161 aa)
RCOM_0730930Helicase, putative. (1335 aa)
RCOM_0993080Ccr4-associated factor, putative. (161 aa)
RCOM_0654810Uncharacterized protein. (386 aa)
RCOM_0654950Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (413 aa)
RCOM_1064750CRM domain-containing protein. (745 aa)
RCOM_0875030Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
RCOM_0610390Bulb-type lectin domain-containing protein. (593 aa)
RCOM_0522460Uncharacterized protein. (699 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
RCOM_1338430Uncharacterized protein. (771 aa)
RCOM_1282050mRNA decapping enzyme 1A, putative. (210 aa)
RCOM_1602530O-linked n-acetylglucosamine transferase, ogt, putative. (1236 aa)
RCOM_1512830RING-type domain-containing protein. (357 aa)
RCOM_1510750Exosome complex exonuclease RRP40, putative. (234 aa)
RCOM_1511580RNase III domain-containing protein. (185 aa)
RCOM_1685490Dead box ATP-dependent RNA helicase, putative. (595 aa)
RCOM_0151030Small nuclear ribonucleoprotein f, putative. (91 aa)
RCOM_0313610Ribonuclease II, putative. (731 aa)
RCOM_0452820CRM domain-containing protein. (412 aa)
RCOM_0444530Ccr4-associated factor, putative. (294 aa)
RCOM_0026480Nudix hydrolase domain-containing protein. (316 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
RCOM_1158840Uncharacterized protein. (745 aa)
RCOM_0374000Exosome complex exonuclease rrp43, putative. (303 aa)
RCOM_0272140Uncharacterized protein. (851 aa)
RCOM_0063290Exosome complex exonuclease rrp45, putative. (463 aa)
RCOM_0267750Uncharacterized protein. (1344 aa)
RCOM_1259240Uncharacterized protein. (366 aa)
RCOM_0490080Exosome complex exonuclease RRP41, putative. (241 aa)
RCOM_0327460CCR4-NOT transcription complex subunit, putative. (664 aa)
RCOM_0347880Exosome complex exonuclease rrp42, putative. (287 aa)
RCOM_0225810Ccr4-associated factor, putative. (292 aa)
RCOM_0034760DNA binding protein, putative. (842 aa)
RCOM_0033810Exosome complex exonuclease RRP41, putative. (180 aa)
RCOM_0752590Cell differentiation protein rcd1, putative. (328 aa)
RCOM_1016710Uncharacterized protein. (467 aa)
RCOM_1016700Uncharacterized protein. (119 aa)
RCOM_1016570Cell differentiation protein rcd1, putative. (341 aa)
RCOM_0204860Elongation factor 1-alpha, putative. (670 aa)
RCOM_0470900Ccr4-associated factor, putative. (274 aa)
RCOM_1627470CRM domain-containing protein. (458 aa)
RCOM_1627130Ribonuclease, putative. (624 aa)
RCOM_1121820Uncharacterized protein. (889 aa)
RCOM_0820360Nucleotide binding protein, putative. (1440 aa)
RCOM_0819690RING-type domain-containing protein. (140 aa)
RCOM_0647870Rrp4, putative. (322 aa)
RCOM_1095620CRM domain-containing protein. (260 aa)
RCOM_0959750Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (406 aa)
RCOM_1481410Zinc finger protein, putative. (493 aa)
RCOM_1609680Ccr4-not transcription complex, putative. (2330 aa)
RCOM_1612650Poly(A) polymerase cid, putative. (696 aa)
RCOM_1614640Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (507 aa)
RCOM_1433350Uncharacterized protein. (107 aa)
RCOM_1524640Sm domain-containing protein. (99 aa)
RCOM_1031510DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
RCOM_1047020Uncharacterized protein. (930 aa)
RCOM_1047550Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (764 aa)
RCOM_0921770Ccr4-associated factor, putative. (274 aa)
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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