52 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_0082390	Uncharacterized protein. (432 aa)
	RCOM_0178200	Tubulin folding cofactor C, putative. (351 aa)
	RCOM_0214170	Microtubule associated protein xmap215, putative. (1992 aa)
	RCOM_0969780	Uncharacterized protein. (272 aa)
	RCOM_1482560	WD_REPEATS_REGION domain-containing protein. (799 aa)
	RCOM_1482440	Uncharacterized protein. (112 aa)
	RCOM_0786390	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	RCOM_0786380	Tubulin beta chain, putative; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (414 aa)
	RCOM_1336530	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
	RCOM_1178690	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (805 aa)
	RCOM_1178680	Uncharacterized protein. (161 aa)
	RCOM_1178670	Uncharacterized protein. (161 aa)
	RCOM_1178660	Uncharacterized protein. (168 aa)
	RCOM_0837820	Pattern formation protein, putative. (1470 aa)
	RCOM_1382920	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	RCOM_0556270	Uncharacterized protein. (88 aa)
	RCOM_0732470	Peptidase, putative; Belongs to the peptidase S8 family. (2072 aa)
	RCOM_0731370	Uncharacterized protein. (164 aa)
	RCOM_0731360	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (545 aa)
	RCOM_0906300	Tubulin alpha-1 chain, putative. (50 aa)
	RCOM_1703960	Uncharacterized protein. (365 aa)
	RCOM_0855220	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	RCOM_0679710	Uncharacterized protein. (88 aa)
	RCOM_1647170	Exocyst componenet sec8, putative. (646 aa)
	RCOM_1647160	Exocyst componenet sec8, putative. (379 aa)
	RCOM_0955310	Uncharacterized protein. (268 aa)
	RCOM_1053380	Pattern formation protein, putative. (462 aa)
	RCOM_1053370	Pattern formation protein, putative. (247 aa)
	RCOM_1053360	Uncharacterized protein. (393 aa)
	RCOM_1039120	Uncharacterized protein. (1219 aa)
	RCOM_1433860	Uncharacterized protein. (173 aa)
	RCOM_1686680	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	RCOM_1686370	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	RCOM_1495920	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (448 aa)
	RCOM_1598060	RING-type E3 ubiquitin transferase. (1427 aa)
	RCOM_1598040	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (448 aa)
	RCOM_1593330	Exocyst complex component sec3, putative. (889 aa)
	RCOM_1584620	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	RCOM_1120940	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	RCOM_1105750	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (789 aa)
	RCOM_1626580	HAUS-augmin3 domain-containing protein. (616 aa)
	RCOM_0085870	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
	RCOM_0204930	Uncharacterized protein. (379 aa)
	RCOM_0249270	Coiled-coil domain-containing protein, putative. (304 aa)
	RCOM_0623200	Leucine aminopeptidase, putative. (587 aa)
	RCOM_0537960	Pattern formation protein, putative. (319 aa)
	RCOM_0537990	Pattern formation protein, putative. (1450 aa)
	RCOM_0070220	Uncharacterized protein. (1041 aa)
	RCOM_0339150	Receptor protein kinase CLAVATA1, putative; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (988 aa)
	RCOM_1361220	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (449 aa)
	RCOM_0161350	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (445 aa)
	RCOM_0453890	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1094 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0070220	RCOM_0085870	B9SXH9	B9SPG2	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_0161350	B9SXH9	B9T1H5	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_0204930	B9SXH9	B9SPQ3	Uncharacterized protein.	Uncharacterized protein.	0.478
RCOM_0070220	RCOM_0339150	B9SXH9	B9T171	Uncharacterized protein.	Receptor protein kinase CLAVATA1, putative; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.478
RCOM_0070220	RCOM_0731360	B9SXH9	B9S382	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.562
RCOM_0070220	RCOM_0731370	B9SXH9	B9S383	Uncharacterized protein.	Uncharacterized protein.	0.478
RCOM_0070220	RCOM_0786380	B9SXH9	B9SB77	Uncharacterized protein.	Tubulin beta chain, putative; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.562
RCOM_0070220	RCOM_0786390	B9SXH9	B9SB78	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_0855220	B9SXH9	B9RUP7	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.478
RCOM_0070220	RCOM_0906300	B9SXH9	B9RXU0	Uncharacterized protein.	Tubulin alpha-1 chain, putative.	0.478
RCOM_0070220	RCOM_1120940	B9SXH9	B9SHE7	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.478
RCOM_0070220	RCOM_1336530	B9SXH9	B9SB14	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_1361220	B9SXH9	B9T1E6	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.478
RCOM_0070220	RCOM_1382920	B9SXH9	B9S7Y8	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.478
RCOM_0070220	RCOM_1495920	B9SXH9	B9R9A9	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.478
RCOM_0070220	RCOM_1584620	B9SXH9	B9R6R7	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.478
RCOM_0070220	RCOM_1598040	B9SXH9	B9R897	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_1598060	B9SXH9	B9R899	Uncharacterized protein.	RING-type E3 ubiquitin transferase.	0.562
RCOM_0070220	RCOM_1686370	B9SXH9	B9RC96	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562
RCOM_0070220	RCOM_1686680	B9SXH9	B9RCB7	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.562