105 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1211150	Transcription elongation factor s-II, putative. (152 aa)
	RCOM_1517510	Delta DNA polymerase, putative. (126 aa)
	RCOM_1067230	DNA-directed RNA polymerase beta chain, putative. (360 aa)
	RCOM_1282430	Transcription factor, putative. (387 aa)
	RCOM_1281670	DNA polymerase epsilon P17 subunit, putative. (157 aa)
	RCOM_0718200	Uncharacterized protein. (645 aa)
	RCOM_0717620	Uncharacterized protein. (198 aa)
	RCOM_0717610	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (187 aa)
	RCOM_0884250	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
	RCOM_1251970	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1105 aa)
	RCOM_0610380	DNA-directed RNA polymerase II, putative. (138 aa)
	RCOM_0535580	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (779 aa)
	RCOM_1063020	XPA-binding protein, putative. (916 aa)
	RCOM_0757170	Transcription factor, putative. (597 aa)
	RCOM_0690190	Transcription elongation factor s-II, putative. (330 aa)
	RCOM_0558550	DNA repair helicase rad3/xp-d, putative. (758 aa)
	RCOM_1553780	Pre-mRNA-splicing factor isy-1, putative. (302 aa)
	RCOM_1553240	NAC domain-containing protein. (134 aa)
	RCOM_0732550	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
	RCOM_0731080	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	RCOM_1192570	Coiled-coil domain-containing protein, putative. (375 aa)
	RCOM_0563570	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (360 aa)
	RCOM_0562940	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (342 aa)
	RCOM_1326830	Transcription factor, putative. (256 aa)
	RCOM_1326820	Transcription factor, putative. (259 aa)
	RCOM_0866490	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (901 aa)
	RCOM_1655220	DNA-directed RNA polymerase beta chain, putative. (349 aa)
	RCOM_0632460	Cullin, putative; Belongs to the cullin family. (807 aa)
	RCOM_1298320	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1270 aa)
	RCOM_1000040	DNA-directed RNA polymerase II, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (266 aa)
	RCOM_0122480	Transcription elongation factor s-II, putative. (1154 aa)
	RCOM_0834990	Uncharacterized protein. (658 aa)
	RCOM_0082070	Rep-A_N domain-containing protein. (99 aa)
	RCOM_1750030	DNA-directed RNA polymerase II, subunit n, putative. (76 aa)
	RCOM_0417820	RNA polymerase II transcription factor B subunit, putative. (266 aa)
	RCOM_0160810	Replication factor C subunit, putative. (661 aa)
	RCOM_0397000	DNA-directed RNA polymerase beta chain, putative. (384 aa)
	RCOM_1869020	Uv inducible DNA polymerase umuc / mucb, putative. (360 aa)
	RCOM_1819360	DNA ligase, NAD-dependent, putative. (491 aa)
	RCOM_2140120	DNA-directed RNA polymerase beta chain, putative. (61 aa)
	RCOM_2157190	DNA-directed RNA polymerase beta chain, putative. (67 aa)
	RCOM_2080690	DNA-directed RNA polymerase beta chain, putative. (178 aa)
	rpoC2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1405 aa)
	rpoC1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (654 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1070 aa)
	RCOM_0936370	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1194 aa)
	RCOM_0936010	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
	RCOM_1314760	Transcription factor, putative. (615 aa)
	RCOM_0811900	DNA-directed RNA polymerase II subunit, putative. (318 aa)
	RCOM_1173750	Uncharacterized protein. (870 aa)
	RCOM_0968040	DNA-directed RNA polymerase II 13.6 kD polypeptide, putative. (156 aa)
	RCOM_0894660	DNA-repair protein xrcc1, putative. (379 aa)
	RCOM_1189750	ATP binding protein, putative. (1109 aa)
	RCOM_0920920	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1203 aa)
	RCOM_1344350	Ubiquitin, putative. (156 aa)
	RCOM_1341390	Uncharacterized protein. (408 aa)
	RCOM_1341380	NAC domain-containing protein. (377 aa)
	RCOM_1341240	Transcription factor, putative. (637 aa)
	RCOM_1340990	NAC domain-containing protein. (302 aa)
	RCOM_1340980	NAC domain-containing protein. (213 aa)
	RCOM_1340970	NAC domain-containing protein. (273 aa)
	RCOM_1340960	Transcription factor, putative. (612 aa)
	RCOM_1081880	F-box domain-containing protein. (182 aa)
	RCOM_1469680	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (622 aa)
	RCOM_1669410	DUF4101 domain-containing protein. (788 aa)
	RCOM_1051580	DNA-directed RNA polymerase II, putative. (225 aa)
	RCOM_1045930	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (670 aa)
	RCOM_1032100	ATPase_AAA_core domain-containing protein. (1247 aa)
	RCOM_1031970	Uncharacterized protein. (159 aa)
	RCOM_1757250	Uncharacterized protein. (150 aa)
	RCOM_1453220	Uncharacterized protein. (1492 aa)
	RCOM_1452980	DNA-directed RNA polymerase II, putative. (239 aa)
	RCOM_1432330	Cyclin h, putative; Belongs to the cyclin family. (312 aa)
	RCOM_1620220	Glycine-rich RNA-binding protein, putative. (176 aa)
	RCOM_1611770	DNA-directed RNA polymerase beta chain, putative. (173 aa)
	RCOM_1687530	Rad25/xp-B DNA repair helicase, putative. (768 aa)
	RCOM_1685440	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (333 aa)
	RCOM_1507690	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (1025 aa)
	RCOM_1496830	DNA-directed RNA polymerase subunit rpb6, putative. (124 aa)
	RCOM_1587390	WD-repeat protein, putative. (479 aa)
	RCOM_1584770	PARP catalytic domain-containing protein. (395 aa)
	RCOM_0373770	Uncharacterized protein. (113 aa)
	RCOM_1416870	DNA binding protein, putative. (496 aa)
	RCOM_1416860	Nutrient reservoir, putative. (518 aa)
	RCOM_0503800	DNA polymerase delta small subunit, putative. (425 aa)
	RCOM_0267720	TFIIH basal transcription factor complex subunit, putative. (597 aa)
	RCOM_1204830	DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	RCOM_0009800	TFIIS N-terminal domain-containing protein. (362 aa)
	RCOM_0260450	NAC domain-containing protein. (58 aa)
	RCOM_0260090	DNA repair and recombination protein RAD26, putative. (1230 aa)
	RCOM_0575190	SANTA domain-containing protein. (368 aa)
	RCOM_0248850	DNA-directed RNA polymerase II, putative. (238 aa)
	RCOM_1058130	Transcription elongation factor s-II, putative. (342 aa)
	RCOM_1406970	Cak assembly factor, putative. (185 aa)
	RCOM_1217560	Pre-mRNA-splicing factor, putative. (531 aa)
	RCOM_1248780	SANTA domain-containing protein. (507 aa)
	RCOM_0582330	Uncharacterized protein. (1139 aa)
	RCOM_0175610	DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative. (51 aa)
	RCOM_1091910	DNA repair protein xp-E, putative. (1033 aa)
	RCOM_1400320	General transcription factor IIH subunit. (465 aa)
	RCOM_1321180	Replication factor C / DNA polymerase III gamma-tau subunit, putative. (342 aa)
	RCOM_0529210	Ubiquitin, putative. (156 aa)
	RCOM_1240020	DNA-directed RNA polymerase beta chain, putative. (53 aa)
	RCOM_1212040	Transcription elongation factor s-II, putative. (337 aa)
	RCOM_1701770	DNA-directed RNA polymerase beta chain, putative. (69 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0009800	RCOM_0122480	B9SVQ9	B9T1M3	TFIIS N-terminal domain-containing protein.	Transcription elongation factor s-II, putative.	0.596
RCOM_0009800	RCOM_0175610	B9SVQ9	B9SNE7	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative.	0.767
RCOM_0009800	RCOM_0248850	B9SVQ9	B9ST46	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II, putative.	0.819
RCOM_0009800	RCOM_0260090	B9SVQ9	B9SV29	TFIIS N-terminal domain-containing protein.	DNA repair and recombination protein RAD26, putative.	0.582
RCOM_0009800	RCOM_0267720	B9SVQ9	B9SX99	TFIIS N-terminal domain-containing protein.	TFIIH basal transcription factor complex subunit, putative.	0.781
RCOM_0009800	RCOM_0373770	B9SVQ9	B9T1F8	TFIIS N-terminal domain-containing protein.	Uncharacterized protein.	0.767
RCOM_0009800	RCOM_0397000	B9SVQ9	B9T8I6	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase beta chain, putative.	0.525
RCOM_0009800	RCOM_0417820	B9SVQ9	B9T3X9	TFIIS N-terminal domain-containing protein.	RNA polymerase II transcription factor B subunit, putative.	0.699
RCOM_0009800	RCOM_0558550	B9SVQ9	B9S438	TFIIS N-terminal domain-containing protein.	DNA repair helicase rad3/xp-d, putative.	0.819
RCOM_0009800	RCOM_0575190	B9SVQ9	B9SUV2	TFIIS N-terminal domain-containing protein.	SANTA domain-containing protein.	0.767
RCOM_0009800	RCOM_0610380	B9SVQ9	B9S7P5	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II, putative.	0.931
RCOM_0009800	RCOM_0632460	B9SVQ9	B9S106	TFIIS N-terminal domain-containing protein.	Cullin, putative; Belongs to the cullin family.	0.621
RCOM_0009800	RCOM_0732550	B9SVQ9	B9S3C9	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative.	0.772
RCOM_0009800	RCOM_0811900	B9SVQ9	B9RYB6	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II subunit, putative.	0.932
RCOM_0009800	RCOM_0884250	B9SVQ9	B9S9D8	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative.	0.772
RCOM_0009800	RCOM_0920920	B9SVQ9	B9RNV9	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.525
RCOM_0009800	RCOM_0936010	B9SVQ9	B9RZ76	TFIIS N-terminal domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.865
RCOM_0009800	RCOM_0936370	B9SVQ9	B9RZ91	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.525
RCOM_0009800	RCOM_0968040	B9SVQ9	B9RVP3	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II 13.6 kD polypeptide, putative.	0.941
RCOM_0009800	RCOM_1000040	B9SVQ9	B9RZN6	TFIIS N-terminal domain-containing protein.	DNA-directed RNA polymerase II, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.930