(13 nodes) Reticulon network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1689400	Reticulon-like protein. (260 aa)
	RCOM_1616970	Reticulon-like protein. (253 aa)
	RCOM_1573680	Reticulon domain-containing protein. (169 aa)
	RCOM_0707880	Reticulon-like protein. (559 aa)
	RCOM_1173020	Reticulon-like protein. (444 aa)
	RCOM_0811400	Reticulon-like protein. (207 aa)
	RCOM_0689680	Reticulon-like protein. (163 aa)
	RCOM_0536570	Reticulon-like protein. (247 aa)
	RCOM_0602350	Reticulon-like protein. (206 aa)
	RCOM_1027290	Reticulon-like protein. (158 aa)
	RCOM_1311450	Reticulon-like protein. (220 aa)
	RCOM_0085230	Reticulon-like protein. (209 aa)
	RCOM_0454370	Reticulon-like protein. (579 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0085230	RCOM_0454370	B9SPE8	B9SU06	Reticulon-like protein.	Reticulon-like protein.	0.509
RCOM_0085230	RCOM_0707880	B9SPE8	B9RQZ4	Reticulon-like protein.	Reticulon-like protein.	0.510
RCOM_0454370	RCOM_0085230	B9SU06	B9SPE8	Reticulon-like protein.	Reticulon-like protein.	0.509
RCOM_0454370	RCOM_0602350	B9SU06	B9S8L7	Reticulon-like protein.	Reticulon-like protein.	0.520
RCOM_0454370	RCOM_0707880	B9SU06	B9RQZ4	Reticulon-like protein.	Reticulon-like protein.	0.905
RCOM_0454370	RCOM_1173020	B9SU06	B9RVU8	Reticulon-like protein.	Reticulon-like protein.	0.505
RCOM_0536570	RCOM_1173020	B9S6H1	B9RVU8	Reticulon-like protein.	Reticulon-like protein.	0.413
RCOM_0602350	RCOM_0454370	B9S8L7	B9SU06	Reticulon-like protein.	Reticulon-like protein.	0.520
RCOM_0707880	RCOM_0085230	B9RQZ4	B9SPE8	Reticulon-like protein.	Reticulon-like protein.	0.510
RCOM_0707880	RCOM_0454370	B9RQZ4	B9SU06	Reticulon-like protein.	Reticulon-like protein.	0.905
RCOM_1173020	RCOM_0454370	B9RVU8	B9SU06	Reticulon-like protein.	Reticulon-like protein.	0.505
RCOM_1173020	RCOM_0536570	B9RVU8	B9S6H1	Reticulon-like protein.	Reticulon-like protein.	0.413