12 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1055530	Uncharacterized protein. (869 aa)
	RCOM_0612600	VARLMGL domain-containing protein. (440 aa)
	RCOM_1027070	Uncharacterized protein. (1047 aa)
	RCOM_0115600	Uncharacterized protein. (779 aa)
	RCOM_0606780	Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative. (848 aa)
	RCOM_1594150	VARLMGL domain-containing protein. (955 aa)
	RCOM_1497860	Uncharacterized protein. (746 aa)
	RCOM_1434570	Uncharacterized protein. (851 aa)
	RCOM_1469450	Uncharacterized protein. (1094 aa)
	RCOM_0999650	Uncharacterized protein. (847 aa)
	RCOM_0991200	Uncharacterized protein. (773 aa)
	RCOM_1723200	Uncharacterized protein. (990 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0115600	RCOM_1469450	B9T732	B9RLM1	Uncharacterized protein.	Uncharacterized protein.	0.451
RCOM_0606780	RCOM_0991200	B9SYA4	B9S4R0	Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative.	Uncharacterized protein.	0.476
RCOM_0606780	RCOM_0999650	B9SYA4	B9RZL7	Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative.	Uncharacterized protein.	0.440
RCOM_0612600	RCOM_1469450	B9SI37	B9RLM1	VARLMGL domain-containing protein.	Uncharacterized protein.	0.501
RCOM_0991200	RCOM_0606780	B9S4R0	B9SYA4	Uncharacterized protein.	Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative.	0.476
RCOM_0991200	RCOM_0999650	B9S4R0	B9RZL7	Uncharacterized protein.	Uncharacterized protein.	0.656
RCOM_0991200	RCOM_1434570	B9S4R0	B9RFH3	Uncharacterized protein.	Uncharacterized protein.	0.660
RCOM_0999650	RCOM_0606780	B9RZL7	B9SYA4	Uncharacterized protein.	Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative.	0.440
RCOM_0999650	RCOM_0991200	B9RZL7	B9S4R0	Uncharacterized protein.	Uncharacterized protein.	0.656
RCOM_0999650	RCOM_1027070	B9RZL7	B9SNR4	Uncharacterized protein.	Uncharacterized protein.	0.448
RCOM_0999650	RCOM_1469450	B9RZL7	B9RLM1	Uncharacterized protein.	Uncharacterized protein.	0.467
RCOM_0999650	RCOM_1723200	B9RZL7	B9S589	Uncharacterized protein.	Uncharacterized protein.	0.443
RCOM_1027070	RCOM_0999650	B9SNR4	B9RZL7	Uncharacterized protein.	Uncharacterized protein.	0.448
RCOM_1027070	RCOM_1434570	B9SNR4	B9RFH3	Uncharacterized protein.	Uncharacterized protein.	0.481
RCOM_1027070	RCOM_1723200	B9SNR4	B9S589	Uncharacterized protein.	Uncharacterized protein.	0.476
RCOM_1055530	RCOM_1594150	B9SZ87	B9R7T3	Uncharacterized protein.	VARLMGL domain-containing protein.	0.461
RCOM_1434570	RCOM_0991200	B9RFH3	B9S4R0	Uncharacterized protein.	Uncharacterized protein.	0.660
RCOM_1434570	RCOM_1027070	B9RFH3	B9SNR4	Uncharacterized protein.	Uncharacterized protein.	0.481
RCOM_1469450	RCOM_0115600	B9RLM1	B9T732	Uncharacterized protein.	Uncharacterized protein.	0.451
RCOM_1469450	RCOM_0612600	B9RLM1	B9SI37	Uncharacterized protein.	VARLMGL domain-containing protein.	0.501