20 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1962080	S1 motif domain-containing protein. (109 aa)
	RCOM_0647870	Rrp4, putative. (322 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_1700760	Suppressor of ty, putative. (1650 aa)
	RCOM_0610390	Bulb-type lectin domain-containing protein. (593 aa)
	RCOM_0732550	DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
	RCOM_1002410	Tex protein-relatedtranscription accessory protein, putative. (412 aa)
	RCOM_1307020	S1 motif domain-containing protein. (365 aa)
	EFTS	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (972 aa)
	RCOM_1686120	S1 motif domain-containing protein. (748 aa)
	RCOM_1510750	Exosome complex exonuclease RRP40, putative. (234 aa)
	RCOM_1507070	S1 motif domain-containing protein. (501 aa)
	RCOM_1602810	ATP-dependent RNA helicase, putative. (1177 aa)
	RCOM_1597240	S1 motif domain-containing protein. (229 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_0494110	Eukaryotic translation initiation factor, putative. (344 aa)
	RCOM_0296330	Uncharacterized protein. (476 aa)
	RCOM_0050440	ATP-dependent RNA helicase, putative. (1031 aa)
	RCOM_0036510	Programmed cell death protein, putative. (1330 aa)
	RCOM_0036500	Programmed cell death protein, putative. (607 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTS	RCOM_0036500	B9RKL9	B9T014	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Programmed cell death protein, putative.	0.829
EFTS	RCOM_0036510	B9RKL9	B9T015	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Programmed cell death protein, putative.	0.829
EFTS	RCOM_0296330	B9RKL9	B9SM67	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.829
EFTS	RCOM_1002410	B9RKL9	B9RZW3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Tex protein-relatedtranscription accessory protein, putative.	0.829
EFTS	RCOM_1095710	B9RKL9	B9SFA0	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative.	0.599
EFTS	RCOM_1307020	B9RKL9	B9RY10	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	S1 motif domain-containing protein.	0.829
EFTS	RCOM_1321070	B9RKL9	B9SI65	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Polyribonucleotide nucleotidyltransferase, putative.	0.655
EFTS	RCOM_1962080	B9RKL9	B9TDI4	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	S1 motif domain-containing protein.	0.829
RCOM_0036500	EFTS	B9T014	B9RKL9	Programmed cell death protein, putative.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.829
RCOM_0036500	RCOM_0036510	B9T014	B9T015	Programmed cell death protein, putative.	Programmed cell death protein, putative.	0.973
RCOM_0036500	RCOM_0050440	B9T014	B9T357	Programmed cell death protein, putative.	ATP-dependent RNA helicase, putative.	0.597
RCOM_0036500	RCOM_0610390	B9T014	B9S7P6	Programmed cell death protein, putative.	Bulb-type lectin domain-containing protein.	0.834
RCOM_0036500	RCOM_0647870	B9T014	B9SFN0	Programmed cell death protein, putative.	Rrp4, putative.	0.843
RCOM_0036500	RCOM_1095710	B9T014	B9SFA0	Programmed cell death protein, putative.	Polyribonucleotide nucleotidyltransferase, putative.	0.402
RCOM_0036500	RCOM_1321070	B9T014	B9SI65	Programmed cell death protein, putative.	Polyribonucleotide nucleotidyltransferase, putative.	0.402
RCOM_0036500	RCOM_1510750	B9T014	B9RB31	Programmed cell death protein, putative.	Exosome complex exonuclease RRP40, putative.	0.817
RCOM_0036500	RCOM_1597240	B9T014	B9R867	Programmed cell death protein, putative.	S1 motif domain-containing protein.	0.418
RCOM_0036500	RCOM_1602810	B9T014	B9R8Y0	Programmed cell death protein, putative.	ATP-dependent RNA helicase, putative.	0.597
RCOM_0036500	RCOM_1962080	B9T014	B9TDI4	Programmed cell death protein, putative.	S1 motif domain-containing protein.	0.540
RCOM_0036510	EFTS	B9T015	B9RKL9	Programmed cell death protein, putative.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.829