79 items (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1589620	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (658 aa)
	RCOM_1602530	O-linked n-acetylglucosamine transferase, ogt, putative. (1236 aa)
	RCOM_1499100	Enolase, putative. (445 aa)
	PFK	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (522 aa)
	RCOM_1510750	Exosome complex exonuclease RRP40, putative. (234 aa)
	RCOM_1609680	Ccr4-not transcription complex, putative. (2330 aa)
	RCOM_1614640	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (507 aa)
	RCOM_1618820	Enolase, putative. (490 aa)
	RCOM_1524640	Sm domain-containing protein. (99 aa)
	RCOM_1526810	Ribonucleoprotein, chloroplast, putative. (256 aa)
	RCOM_1576440	Uncharacterized protein. (809 aa)
	RCOM_1576470	Uncharacterized protein. (777 aa)
	RCOM_1046300	WD_REPEATS_REGION domain-containing protein. (831 aa)
	PFK-2	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (632 aa)
	RCOM_0943710	ATP-dependent RNA helicase, putative. (1129 aa)
	RCOM_1465120	Rubisco subunit binding-protein beta subunit, rubb, putative; Belongs to the chaperonin (HSP60) family. (592 aa)
	RCOM_0920830	Uncharacterized protein. (206 aa)
	RCOM_0921770	Ccr4-associated factor, putative. (274 aa)
	RCOM_1487470	Polyadenylate-binding protein, putative. (608 aa)
	PFK-3	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (543 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	PFK-4	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (485 aa)
	RCOM_0799080	Exosome complex exonuclease RRP46, putative. (211 aa)
	RCOM_1023530	Chaperonin-60kD, ch60, putative; Belongs to the chaperonin (HSP60) family. (574 aa)
	RCOM_0817860	Heat shock protein, putative; Belongs to the heat shock protein 70 family. (657 aa)
	RCOM_0812530	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
	RCOM_1351720	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (632 aa)
	RCOM_0866780	RNA exonuclease NGL1, putative. (443 aa)
	RCOM_1194900	ATP-dependent RNA helicase, putative. (1229 aa)
	RCOM_0730930	Helicase, putative. (1335 aa)
	RCOM_0731100	Enolase, putative. (469 aa)
	RCOM_0673440	Uncharacterized protein. (739 aa)
	RCOM_1722530	Chaperonin-60kD, ch60, putative; Belongs to the chaperonin (HSP60) family. (575 aa)
	RCOM_0875030	Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
	RCOM_0610260	Ammonium transporter. (510 aa)
	RCOM_0522460	Uncharacterized protein. (699 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
	RCOM_0342910	Rubisco subunit binding-protein beta subunit, rubb, putative; Belongs to the chaperonin (HSP60) family. (605 aa)
	RCOM_1282470	Ccr4-associated factor, putative. (281 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	RCOM_0419820	ATP-dependent RNA helicase, putative. (994 aa)
	RCOM_1522480	Nucleic acid binding protein, putative. (526 aa)
	RCOM_1095710	Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
	RCOM_0647870	Rrp4, putative. (322 aa)
	PFK-5	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (561 aa)
	RCOM_0819690	RING-type domain-containing protein. (140 aa)
	RCOM_1121820	Uncharacterized protein. (889 aa)
	RCOM_1321070	Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
	RCOM_0577590	ATP-dependent RNA helicase, putative. (1172 aa)
	RCOM_1027520	Uncharacterized protein. (795 aa)
	RCOM_0296620	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (657 aa)
	RCOM_1627130	Ribonuclease, putative. (624 aa)
	RCOM_1627470	CRM domain-containing protein. (458 aa)
	RCOM_0470900	Ccr4-associated factor, putative. (274 aa)
	RCOM_0311770	Chaperonin-60kD, ch60, putative; Belongs to the chaperonin (HSP60) family. (573 aa)
	RCOM_0496650	Helicase, putative. (991 aa)
	RCOM_0382120	Enolase, putative. (445 aa)
	RCOM_1016570	Cell differentiation protein rcd1, putative. (341 aa)
	RCOM_0752590	Cell differentiation protein rcd1, putative. (328 aa)
	RCOM_0259980	Sulfate/thiosulfate import ATP-binding protein cysA, putative. (209 aa)
	RCOM_0033810	Exosome complex exonuclease RRP41, putative. (180 aa)
	RCOM_0225810	Ccr4-associated factor, putative. (292 aa)
	RCOM_0347880	Exosome complex exonuclease rrp42, putative. (287 aa)
	RCOM_0327460	CCR4-NOT transcription complex subunit, putative. (664 aa)
	RCOM_0490080	Exosome complex exonuclease RRP41, putative. (241 aa)
	RCOM_1259240	Uncharacterized protein. (366 aa)
	RCOM_0267750	Uncharacterized protein. (1344 aa)
	PFK-6	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (431 aa)
	RCOM_0063290	Exosome complex exonuclease rrp45, putative. (463 aa)
	RCOM_0041430	Carbon catabolite repressor protein, putative. (603 aa)
	RCOM_0645430	Helicase, putative. (962 aa)
	RCOM_0272140	Uncharacterized protein. (851 aa)
	RCOM_0374000	Exosome complex exonuclease rrp43, putative. (303 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	RCOM_0444530	Ccr4-associated factor, putative. (294 aa)
	RCOM_0300280	Uncharacterized protein. (189 aa)
	RCOM_0103060	Cobalt import ATP-binding protein cbiO, putative. (324 aa)
	RCOM_0151030	Small nuclear ribonucleoprotein f, putative. (91 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM1-2	B9RR81	B9T3A8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.900
LSM1	LSM3	B9RR81	B9T2G3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1	LSM4	B9RR81	B9SAP2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
LSM1	LSM8	B9RR81	B9SCZ8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.944
LSM1	RCOM_0151030	B9RR81	B9T839	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.978
LSM1	RCOM_0267750	B9RR81	B9SXA2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.724
LSM1	RCOM_0730930	B9RR81	B9S370	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Helicase, putative.	0.489
LSM1	RCOM_1259240	B9RR81	B9SX11	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.812
LSM1	RCOM_1524640	B9RR81	B9RHF7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Sm domain-containing protein.	0.989
LSM1	RCOM_1609680	B9RR81	B9RD55	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Ccr4-not transcription complex, putative.	0.533
LSM1	RCOM_1614640	B9RR81	B9RDP2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.977
LSM1-2	LSM1	B9T3A8	B9RR81	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.900
LSM1-2	LSM3	B9T3A8	B9T2G3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
LSM1-2	LSM4	B9T3A8	B9SAP2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
LSM1-2	LSM8	B9T3A8	B9SCZ8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.944
LSM1-2	RCOM_0151030	B9T3A8	B9T839	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein f, putative.	0.978
LSM1-2	RCOM_0267750	B9T3A8	B9SXA2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.724
LSM1-2	RCOM_0730930	B9T3A8	B9S370	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Helicase, putative.	0.489
LSM1-2	RCOM_1259240	B9T3A8	B9SX11	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.812
LSM1-2	RCOM_1524640	B9T3A8	B9RHF7	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Sm domain-containing protein.	0.989