(34 nodes) Circadian rhythm - plant network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1691060	Ubiquitin ligase protein cop1, putative. (1044 aa)
	RCOM_1436840	BHLH domain-containing protein. (758 aa)
	RCOM_1437130	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1124 aa)
	RCOM_1444730	Chalcone synthase, putative; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (331 aa)
	RCOM_1035330	DNA photolyase, putative. (660 aa)
	RCOM_1076950	Phosphatidylethanolamine-binding protein, putative. (174 aa)
	RCOM_1077170	Phosphatidylethanolamine-binding protein, putative. (94 aa)
	RCOM_1340450	HTH myb-type domain-containing protein. (768 aa)
	RCOM_1343120	BHLH domain-containing protein. (584 aa)
	RCOM_1339810	Sensory transduction histidine kinase, putative. (697 aa)
	RCOM_0924540	Transcription factor hy5, putative. (169 aa)
	RCOM_1486170	Uncharacterized protein. (783 aa)
	RCOM_0798500	Uncharacterized protein. (720 aa)
	RCOM_0855760	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (259 aa)
	RCOM_1020600	Chalcone synthase, putative; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (390 aa)
	RCOM_1000590	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1141 aa)
	RCOM_1004100	Transcription factor HY5, putative. (172 aa)
	RCOM_0561330	Chalcone synthase, putative; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (369 aa)
	RCOM_0961910	Protein GIGANTEA, putative. (1161 aa)
	RCOM_0969830	Uncharacterized protein. (667 aa)
	RCOM_0743800	Two-component response regulator ARR2, putative. (659 aa)
	RCOM_0819890	Sensory transduction histidine kinase, putative. (762 aa)
	RCOM_0578850	Casein kinase II, alpha chain, putative; Belongs to the protein kinase superfamily. (489 aa)
	RCOM_0658550	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (338 aa)
	RCOM_1124340	Phosphatidylethanolamine-binding protein, putative. (173 aa)
	RCOM_0395760	Ubiquitin ligase protein cop1, putative. (426 aa)
	RCOM_1227970	Transcription factor, putative. (229 aa)
	RCOM_1006940	DNA photolyase, putative. (640 aa)
	RCOM_1441020	Sensory transduction histidine kinase, putative. (807 aa)
	RCOM_0149760	Ubiquitin ligase protein cop1, putative. (1011 aa)
	RCOM_0396430	Casein kinase II, alpha chain, putative. (295 aa)
	RCOM_0053590	Adagio protein, putative. (630 aa)
	RCOM_0545900	PAS domain-containing protein. (613 aa)
	RCOM_0002700	Ubiquitin ligase protein cop1, putative. (677 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0002700	RCOM_0053590	B9T7A8	B9T4M9	Ubiquitin ligase protein cop1, putative.	Adagio protein, putative.	0.615
RCOM_0002700	RCOM_0149760	B9T7A8	B9T343	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.710
RCOM_0002700	RCOM_0395760	B9T7A8	B9SS39	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.909
RCOM_0002700	RCOM_0545900	B9T7A8	B9T4Q0	Ubiquitin ligase protein cop1, putative.	PAS domain-containing protein.	0.610
RCOM_0002700	RCOM_0798500	B9T7A8	B9RRW1	Ubiquitin ligase protein cop1, putative.	Uncharacterized protein.	0.911
RCOM_0002700	RCOM_0924540	B9T7A8	B9RP68	Ubiquitin ligase protein cop1, putative.	Transcription factor hy5, putative.	0.996
RCOM_0002700	RCOM_0961910	B9T7A8	B9SEC2	Ubiquitin ligase protein cop1, putative.	Protein GIGANTEA, putative.	0.956
RCOM_0002700	RCOM_1000590	B9T7A8	B9RZR1	Ubiquitin ligase protein cop1, putative.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.633
RCOM_0002700	RCOM_1004100	B9T7A8	B9S029	Ubiquitin ligase protein cop1, putative.	Transcription factor HY5, putative.	0.991
RCOM_0002700	RCOM_1006940	B9T7A8	B9SZW0	Ubiquitin ligase protein cop1, putative.	DNA photolyase, putative.	0.987
RCOM_0002700	RCOM_1035330	B9T7A8	B9RJK3	Ubiquitin ligase protein cop1, putative.	DNA photolyase, putative.	0.984
RCOM_0002700	RCOM_1340450	B9T7A8	B9RMV4	Ubiquitin ligase protein cop1, putative.	HTH myb-type domain-containing protein.	0.433
RCOM_0002700	RCOM_1343120	B9T7A8	B9RN31	Ubiquitin ligase protein cop1, putative.	BHLH domain-containing protein.	0.526
RCOM_0002700	RCOM_1436840	B9T7A8	B9RFR8	Ubiquitin ligase protein cop1, putative.	BHLH domain-containing protein.	0.526
RCOM_0002700	RCOM_1437130	B9T7A8	B9RFS7	Ubiquitin ligase protein cop1, putative.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.834
RCOM_0002700	RCOM_1486170	B9T7A8	B9RQ79	Ubiquitin ligase protein cop1, putative.	Uncharacterized protein.	0.911
RCOM_0002700	RCOM_1691060	B9T7A8	B9RCP1	Ubiquitin ligase protein cop1, putative.	Ubiquitin ligase protein cop1, putative.	0.710
RCOM_0053590	RCOM_0002700	B9T4M9	B9T7A8	Adagio protein, putative.	Ubiquitin ligase protein cop1, putative.	0.615
RCOM_0053590	RCOM_0798500	B9T4M9	B9RRW1	Adagio protein, putative.	Uncharacterized protein.	0.503
RCOM_0053590	RCOM_0961910	B9T4M9	B9SEC2	Adagio protein, putative.	Protein GIGANTEA, putative.	0.995