STRINGSTRING
OsI_01280 OsI_01280 LSM3 LSM3 OsI_04641 OsI_04641 OsI_05771 OsI_05771 OsI_05837 OsI_05837 OsI_06527 OsI_06527 OsI_06664 OsI_06664 OsI_07368 OsI_07368 OsI_07847 OsI_07847 OsI_09533 OsI_09533 OsI_10698 OsI_10698 OsI_12008 OsI_12008 OsI_13221 OsI_13221 OsI_13297 OsI_13297 OsI_17797 OsI_17797 OsI_18512 OsI_18512 OsI_23659 OsI_23659 OsI_23950 OsI_23950 OsI_24205 OsI_24205 OsI_24854 OsI_24854 OsI_27814 OsI_27814 OsI_29403 OsI_29403 OsI_30534 OsI_30534 OsI_31320 OsI_31320 OsI_34194 OsI_34194 OsI_35870 OsI_35870 OsI_36180 OsI_36180 OsI_05349 OsI_05349 LSM4 LSM4 OsI_05466 OsI_05466 OsI_05681 OsI_05681 OsI_05843 OsI_05843 OsI_07364 OsI_07364 OsI_06076 OsI_06076 OsI_13469 OsI_13469 OsI_10848 OsI_10848 OsI_14028 OsI_14028 OsI_11395 OsI_11395 OsI_14355 OsI_14355 OsI_16933 OsI_16933 OsI_16257 OsI_16257 OsI_19425 OsI_19425 LSM8 LSM8 LSM5 LSM5 OsI_18577 OsI_18577 OsI_21820 OsI_21820 OsI_25296 OsI_25296 OsI_25307 OsI_25307 OsI_26821 OsI_26821 OsI_27848 OsI_27848 OsI_27901 OsI_27901 OsI_28028 OsI_28028 OsI_31207 OsI_31207 OsI_33883 OsI_33883 OsI_34094 OsI_34094 OsI_36896 OsI_36896
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_01280PRP1_N domain-containing protein. (892 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
OsI_04641RRM domain-containing protein. (214 aa)
OsI_05771CPSF_A domain-containing protein. (1234 aa)
OsI_05837Uncharacterized protein. (249 aa)
OsI_06527Uncharacterized protein. (801 aa)
OsI_06664U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (238 aa)
OsI_07368Uncharacterized protein. (808 aa)
OsI_07847Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
OsI_09533PSP domain-containing protein. (581 aa)
OsI_10698Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (134 aa)
OsI_12008Small nuclear ribonucleoprotein G. (80 aa)
OsI_13221Uncharacterized protein; Belongs to the DEAD box helicase family. (736 aa)
OsI_13297Matrin-type domain-containing protein. (507 aa)
OsI_17797Uncharacterized protein. (110 aa)
OsI_18512U1 small nuclear ribonucleoprotein A; Involved in nuclear pre-mRNA splicing. (253 aa)
OsI_23659Tr-type G domain-containing protein. (996 aa)
OsI_23950WD_REPEATS_REGION domain-containing protein. (326 aa)
OsI_24205Uncharacterized protein. (627 aa)
OsI_24854Nop domain-containing protein. (484 aa)
OsI_27814Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (79 aa)
OsI_29403Splicing factor subunit; Belongs to the SF3B5 family. (104 aa)
OsI_30534Uncharacterized protein. (826 aa)
OsI_31320Uncharacterized protein. (555 aa)
OsI_34194Uncharacterized protein. (1039 aa)
OsI_35870Uncharacterized protein. (152 aa)
OsI_36180Uncharacterized protein. (131 aa)
OsI_05349Small nuclear ribonucleoprotein Sm D2. (96 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
OsI_05466Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
OsI_05681Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
OsI_05843TOG domain-containing protein. (522 aa)
OsI_07364Sm domain-containing protein. (97 aa)
OsI_06076Sm domain-containing protein. (146 aa)
OsI_13469Uncharacterized protein. (2098 aa)
OsI_10848Matrin-type domain-containing protein. (322 aa)
OsI_14028RRM domain-containing protein. (130 aa)
OsI_11395Uncharacterized protein. (467 aa)
OsI_14355WD_REPEATS_REGION domain-containing protein. (534 aa)
OsI_16933Nop domain-containing protein. (538 aa)
OsI_16257Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (170 aa)
OsI_19425Small nuclear ribonucleoprotein Sm D2. (105 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (136 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
OsI_18577MPN domain-containing protein. (2278 aa)
OsI_21820MPN domain-containing protein. (2205 aa)
OsI_25296Uncharacterized protein. (142 aa)
OsI_25307CPSF_A domain-containing protein. (1429 aa)
OsI_26821Small nuclear ribonucleoprotein G. (80 aa)
OsI_27848Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (120 aa)
OsI_27901Uncharacterized protein. (1049 aa)
OsI_28028Sm domain-containing protein. (98 aa)
OsI_31207Uncharacterized protein. (577 aa)
OsI_33883Uncharacterized protein. (355 aa)
OsI_34094Uncharacterized protein. (274 aa)
OsI_36896Sm domain-containing protein. (86 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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