(12 nodes) Mixed, incl. Ufd1-like, Nn domain, and Nuclear protein localization protein 4 network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_00362	Uncharacterized protein. (281 aa)
	OsI_02003	Uncharacterized protein. (415 aa)
	OsI_06110	Uncharacterized protein. (315 aa)
	OsI_07413	UBX domain-containing protein. (231 aa)
	OsI_07451	UBX domain-containing protein. (137 aa)
	OsI_17067	Uncharacterized protein. (320 aa)
	OsI_25687	UBX domain-containing protein. (395 aa)
	OsI_26185	Uncharacterized protein. (155 aa)
	OsI_02004	Uncharacterized protein. (124 aa)
	OsI_06666	ANK_REP_REGION domain-containing protein. (455 aa)
	OsI_08877	AAA domain-containing protein; Belongs to the AAA ATPase family. (612 aa)
	OsI_21333	Uncharacterized protein. (770 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00362	OsI_02003	A2WKK6	A2WQ74	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_00362	OsI_02004	A2WKK6	B8A8A7	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_00362	OsI_06110	A2WKK6	A2X1N0	Uncharacterized protein.	Uncharacterized protein.	0.869
OsI_00362	OsI_06666	A2WKK6	B8AFB6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.871
OsI_00362	OsI_07413	A2WKK6	A2X5D7	Uncharacterized protein.	UBX domain-containing protein.	0.899
OsI_00362	OsI_07451	A2WKK6	A2X5H1	Uncharacterized protein.	UBX domain-containing protein.	0.899
OsI_00362	OsI_08877	A2WKK6	B8AIG7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.871
OsI_00362	OsI_17067	A2WKK6	A2XWN8	Uncharacterized protein.	Uncharacterized protein.	0.870
OsI_00362	OsI_21333	A2WKK6	B8B1J7	Uncharacterized protein.	Uncharacterized protein.	0.742
OsI_00362	OsI_25687	A2WKK6	A2YKE1	Uncharacterized protein.	UBX domain-containing protein.	0.899
OsI_00362	OsI_26185	A2WKK6	A2YLT8	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_02003	OsI_00362	A2WQ74	A2WKK6	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_02003	OsI_06110	A2WQ74	A2X1N0	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_02003	OsI_06666	A2WQ74	B8AFB6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.895
OsI_02003	OsI_07413	A2WQ74	A2X5D7	Uncharacterized protein.	UBX domain-containing protein.	0.914
OsI_02003	OsI_07451	A2WQ74	A2X5H1	Uncharacterized protein.	UBX domain-containing protein.	0.914
OsI_02003	OsI_08877	A2WQ74	B8AIG7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.895
OsI_02003	OsI_17067	A2WQ74	A2XWN8	Uncharacterized protein.	Uncharacterized protein.	0.966
OsI_02003	OsI_21333	A2WQ74	B8B1J7	Uncharacterized protein.	Uncharacterized protein.	0.796
OsI_02003	OsI_25687	A2WQ74	A2YKE1	Uncharacterized protein.	UBX domain-containing protein.	0.914

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