50 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_00019	Uncharacterized protein. (72 aa)
	OsI_00384	Uncharacterized protein. (255 aa)
	OsI_03265	HMA domain-containing protein. (143 aa)
	OsI_03819	AAA domain-containing protein. (1002 aa)
	OsI_04512	F-box domain-containing protein. (417 aa)
	OsI_05018	Uncharacterized protein. (60 aa)
	OsI_06823	Uncharacterized protein. (537 aa)
	OsI_07360	Uncharacterized protein. (70 aa)
	OsI_07361	Uncharacterized protein. (69 aa)
	OsI_09309	Uncharacterized protein. (173 aa)
	OsI_09812	HMA domain-containing protein. (211 aa)
	OsI_14956	BURP domain-containing protein. (270 aa)
	OsI_15646	Uncharacterized protein. (185 aa)
	OsI_15657	Uncharacterized protein. (70 aa)
	OsI_17140	Glycosyltransferase. (357 aa)
	OsI_17148	FLZ-type domain-containing protein. (97 aa)
	OsI_18094	Uncharacterized protein. (72 aa)
	OsI_21312	Uncharacterized protein. (215 aa)
	OsI_21577	Uncharacterized protein. (111 aa)
	OsI_22212	Uncharacterized protein. (132 aa)
	OsI_25756	C2H2-type domain-containing protein. (103 aa)
	OsI_31007	Malectin_like domain-containing protein. (216 aa)
	OsI_31792	AAA domain-containing protein. (984 aa)
	OsI_34380	LysM domain-containing protein. (106 aa)
	OsI_35160	NAC domain-containing protein. (130 aa)
	OsI_35370	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (65 aa)
	OsI_35597	Uncharacterized protein. (194 aa)
	OsI_36093	NB-ARC domain-containing protein. (125 aa)
	OsI_38571	ENTH domain-containing protein. (106 aa)
	OsI_05177	Uncharacterized protein. (115 aa)
	OsI_03763	Uncharacterized protein. (542 aa)
	OsI_02674	Uncharacterized protein. (106 aa)
	OsI_00381	Uncharacterized protein. (415 aa)
	OsI_00394	XH domain-containing protein. (89 aa)
	OsI_14333	Uncharacterized protein. (294 aa)
	OsI_14334	Uncharacterized protein. (258 aa)
	OsI_11619	Uncharacterized protein. (253 aa)
	OsI_16878	Uncharacterized protein. (209 aa)
	OsI_17524	CRIB domain-containing protein. (131 aa)
	OsI_20624	Uncharacterized protein. (669 aa)
	OsI_24267	Uncharacterized protein. (189 aa)
	OsI_23738	GRAS domain-containing protein. (108 aa)
	OsI_27086	Uncharacterized protein. (159 aa)
	OsI_27429	Uncharacterized protein. (99 aa)
	OsI_27791	Uncharacterized protein. (66 aa)
	OsI_29754	AAA domain-containing protein. (967 aa)
	OsI_30636	HMA domain-containing protein. (136 aa)
	OsI_30672	Uncharacterized protein. (72 aa)
	OsI_32446	Uncharacterized protein. (221 aa)
	OsI_35885	Uncharacterized protein. (124 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00019	OsI_00381	A2WJM4	B8AD90	Uncharacterized protein.	Uncharacterized protein.	0.530
OsI_00019	OsI_00384	A2WJM4	A2WKM7	Uncharacterized protein.	Uncharacterized protein.	0.544
OsI_00019	OsI_00394	A2WJM4	B8AD96	Uncharacterized protein.	XH domain-containing protein.	0.526
OsI_00019	OsI_02674	A2WJM4	B8AB52	Uncharacterized protein.	Uncharacterized protein.	0.649
OsI_00019	OsI_03265	A2WJM4	A2WTS3	Uncharacterized protein.	HMA domain-containing protein.	0.420
OsI_00019	OsI_03763	A2WJM4	B8A9T9	Uncharacterized protein.	Uncharacterized protein.	0.469
OsI_00019	OsI_03819	A2WJM4	A2WVA5	Uncharacterized protein.	AAA domain-containing protein.	0.503
OsI_00019	OsI_04512	A2WJM4	A2WX70	Uncharacterized protein.	F-box domain-containing protein.	0.495
OsI_00019	OsI_05018	A2WJM4	A2WYL2	Uncharacterized protein.	Uncharacterized protein.	0.533
OsI_00019	OsI_05177	A2WJM4	B8A947	Uncharacterized protein.	Uncharacterized protein.	0.574
OsI_00019	OsI_06823	A2WJM4	A2X3N2	Uncharacterized protein.	Uncharacterized protein.	0.522
OsI_00019	OsI_09309	A2WJM4	A2XAM8	Uncharacterized protein.	Uncharacterized protein.	0.527
OsI_00019	OsI_09812	A2WJM4	A2XBZ4	Uncharacterized protein.	HMA domain-containing protein.	0.526
OsI_00019	OsI_11619	A2WJM4	B8APT9	Uncharacterized protein.	Uncharacterized protein.	0.464
OsI_00019	OsI_14333	A2WJM4	B8ANN9	Uncharacterized protein.	Uncharacterized protein.	0.513
OsI_00019	OsI_14334	A2WJM4	B8ANP0	Uncharacterized protein.	Uncharacterized protein.	0.509
OsI_00019	OsI_14956	A2WJM4	A2XQP0	Uncharacterized protein.	BURP domain-containing protein.	0.527
OsI_00019	OsI_15646	A2WJM4	A2XSQ9	Uncharacterized protein.	Uncharacterized protein.	0.512
OsI_00019	OsI_16878	A2WJM4	B8ASP7	Uncharacterized protein.	Uncharacterized protein.	0.532
OsI_00019	OsI_17140	A2WJM4	A2XWV4	Uncharacterized protein.	Glycosyltransferase.	0.499

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