16 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_00019	Uncharacterized protein. (72 aa)
	OsI_00384	Uncharacterized protein. (255 aa)
	OsI_14956	BURP domain-containing protein. (270 aa)
	OsI_31792	AAA domain-containing protein. (984 aa)
	OsI_35370	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (65 aa)
	OsI_35597	Uncharacterized protein. (194 aa)
	OsI_05177	Uncharacterized protein. (115 aa)
	OsI_02674	Uncharacterized protein. (106 aa)
	OsI_00381	Uncharacterized protein. (415 aa)
	OsI_16878	Uncharacterized protein. (209 aa)
	OsI_24267	Uncharacterized protein. (189 aa)
	OsI_27086	Uncharacterized protein. (159 aa)
	OsI_27791	Uncharacterized protein. (66 aa)
	OsI_29754	AAA domain-containing protein. (967 aa)
	OsI_30672	Uncharacterized protein. (72 aa)
	OsI_35885	Uncharacterized protein. (124 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00019	OsI_00381	A2WJM4	B8AD90	Uncharacterized protein.	Uncharacterized protein.	0.530
OsI_00019	OsI_00384	A2WJM4	A2WKM7	Uncharacterized protein.	Uncharacterized protein.	0.544
OsI_00019	OsI_02674	A2WJM4	B8AB52	Uncharacterized protein.	Uncharacterized protein.	0.649
OsI_00019	OsI_05177	A2WJM4	B8A947	Uncharacterized protein.	Uncharacterized protein.	0.574
OsI_00019	OsI_14956	A2WJM4	A2XQP0	Uncharacterized protein.	BURP domain-containing protein.	0.527
OsI_00019	OsI_16878	A2WJM4	B8ASP7	Uncharacterized protein.	Uncharacterized protein.	0.532
OsI_00019	OsI_24267	A2WJM4	B8B1U4	Uncharacterized protein.	Uncharacterized protein.	0.505
OsI_00019	OsI_27086	A2WJM4	B8B549	Uncharacterized protein.	Uncharacterized protein.	0.513
OsI_00019	OsI_27791	A2WJM4	B8BAN6	Uncharacterized protein.	Uncharacterized protein.	0.534
OsI_00019	OsI_29754	A2WJM4	B8BC41	Uncharacterized protein.	AAA domain-containing protein.	0.505
OsI_00019	OsI_30672	A2WJM4	B8BDQ1	Uncharacterized protein.	Uncharacterized protein.	0.547
OsI_00019	OsI_31792	A2WJM4	A2Z2F6	Uncharacterized protein.	AAA domain-containing protein.	0.511
OsI_00019	OsI_35370	A2WJM4	A2ZC58	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.538
OsI_00019	OsI_35597	A2WJM4	A2ZCT3	Uncharacterized protein.	Uncharacterized protein.	0.523
OsI_00019	OsI_35885	A2WJM4	B8BK63	Uncharacterized protein.	Uncharacterized protein.	0.545
OsI_00381	OsI_00019	B8AD90	A2WJM4	Uncharacterized protein.	Uncharacterized protein.	0.530
OsI_00381	OsI_02674	B8AD90	B8AB52	Uncharacterized protein.	Uncharacterized protein.	0.523
OsI_00381	OsI_05177	B8AD90	B8A947	Uncharacterized protein.	Uncharacterized protein.	0.527
OsI_00381	OsI_14956	B8AD90	A2XQP0	Uncharacterized protein.	BURP domain-containing protein.	0.566
OsI_00381	OsI_16878	B8AD90	B8ASP7	Uncharacterized protein.	Uncharacterized protein.	0.533

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