(59 nodes) Mixed, incl. EF-hand, calcium binding motif, and Muscle contraction network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_02758	Uncharacterized protein. (252 aa)
	OsI_03863	Uncharacterized protein. (225 aa)
	OsI_04003	EF-hand domain-containing protein. (111 aa)
	OsI_05194	Uncharacterized protein. (202 aa)
	OsI_05198	Uncharacterized protein. (204 aa)
	OsI_05248	Uncharacterized protein. (151 aa)
	OsI_05249	Uncharacterized protein. (151 aa)
	OsI_05250	Uncharacterized protein. (146 aa)
	OsI_05947	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (493 aa)
	OsI_06279	NAF domain-containing protein. (174 aa)
	OsI_06474	EF-hand domain-containing protein. (166 aa)
	OsI_11276	Uncharacterized protein. (173 aa)
	OsI_12287	PMD domain-containing protein. (853 aa)
	OsI_13291	Uncharacterized protein. (282 aa)
	OsI_14037	Uncharacterized protein. (213 aa)
	OsI_14038	Uncharacterized protein. (200 aa)
	OsI_16440	Uncharacterized protein. (197 aa)
	OsI_19419	Uncharacterized protein. (197 aa)
	OsI_19494	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (456 aa)
	OsI_19499	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (451 aa)
	OsI_20430	Uncharacterized protein. (155 aa)
	OsI_20610	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily. (510 aa)
	OsI_24270	Uncharacterized protein. (170 aa)
	OsI_26532	Uncharacterized protein. (550 aa)
	OsI_27611	Uncharacterized protein. (148 aa)
	OsI_31346	Uncharacterized protein. (173 aa)
	OsI_31655	Uncharacterized protein. (185 aa)
	OsI_33398	Uncharacterized protein. (200 aa)
	OsI_33409	Uncharacterized protein. (292 aa)
	OsI_34989	Uncharacterized protein. (166 aa)
	OsI_35004	Uncharacterized protein. (272 aa)
	OsI_35052	Uncharacterized protein. (199 aa)
	OsI_35077	Uncharacterized protein. (146 aa)
	OsI_36622	Uncharacterized protein. (151 aa)
	OsI_37139	Uncharacterized protein. (149 aa)
	OsI_37422	Uncharacterized protein. (102 aa)
	OsI_02303	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily. (554 aa)
	OsI_03811	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (474 aa)
	OsI_08166	Uncharacterized protein. (157 aa)
	OsI_07217	Uncharacterized protein. (149 aa)
	OsI_07218	Uncharacterized protein. (258 aa)
	OsI_12280	PMD domain-containing protein. (800 aa)
	OsI_14062	PMD domain-containing protein. (1633 aa)
	OsI_11332	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (449 aa)
	OsI_17306	Uncharacterized protein. (420 aa)
	OsI_19502	Protein kinase domain-containing protein. (259 aa)
	OsI_19116	Uncharacterized protein. (669 aa)
	OsI_27359	Uncharacterized protein. (135 aa)
	OsI_25403	Uncharacterized protein. (189 aa)
	OsI_26889	Uncharacterized protein. (169 aa)
	OsI_29906	Uncharacterized protein. (464 aa)
	OsI_28645	Uncharacterized protein. (114 aa)
	OsI_27646	Uncharacterized protein. (195 aa)
	OsI_31900	Uncharacterized protein. (446 aa)
	OsI_35060	Uncharacterized protein. (412 aa)
	OsI_37379	Uncharacterized protein. (160 aa)
	OsI_37420	Uncharacterized protein. (152 aa)
	OsI_37873	Uncharacterized protein. (161 aa)
	OsI_37957	PMD domain-containing protein. (443 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_02303	OsI_02758	B8A9P2	A2WSC3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_03863	B8A9P2	A2WVE9	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_04003	B8A9P2	A2WVS9	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	EF-hand domain-containing protein.	0.647
OsI_02303	OsI_05194	B8A9P2	A2WZ27	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_05198	B8A9P2	A2WZ30	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_05248	B8A9P2	A2WZ78	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_05249	B8A9P2	A2WZ79	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_05250	B8A9P2	A2WZ80	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_06474	B8A9P2	A2X2R4	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	EF-hand domain-containing protein.	0.470
OsI_02303	OsI_07217	B8A9P2	B8AHW8	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.634
OsI_02303	OsI_07218	B8A9P2	B8AHW9	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.634
OsI_02303	OsI_11276	B8A9P2	A2XFX5	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.476
OsI_02303	OsI_13291	B8A9P2	A2XLE2	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.475
OsI_02303	OsI_14037	B8A9P2	A2XNA2	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_14038	B8A9P2	A2XNA3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_16440	B8A9P2	A2XV02	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_19419	B8A9P2	A2Y330	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_20430	B8A9P2	A2Y608	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.475
OsI_02303	OsI_24270	B8A9P2	A2YGG7	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470
OsI_02303	OsI_25403	B8A9P2	B8B8G8	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.	Uncharacterized protein.	0.470

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