(82 nodes) Mixed, incl. Pentatricopeptide repeat domain, and Gamma-tubulin complex network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_00353	Uncharacterized protein. (429 aa)
	OsI_00355	Uncharacterized protein. (279 aa)
	OsI_00576	Uncharacterized protein. (1121 aa)
	OsI_00990	Uncharacterized protein. (212 aa)
	OsI_01547	Uncharacterized protein. (504 aa)
	OsI_02350	Uncharacterized protein. (596 aa)
	OsI_02796	Uncharacterized protein. (616 aa)
	OsI_04314	Uncharacterized protein. (665 aa)
	OsI_04892	RRM domain-containing protein. (505 aa)
	OsI_05773	Uncharacterized protein. (436 aa)
	OsI_06436	Uncharacterized protein. (543 aa)
	OsI_07159	Uncharacterized protein. (506 aa)
	OsI_07823	Uncharacterized protein. (703 aa)
	OsI_07956	Uncharacterized protein. (500 aa)
	OsI_09727	Uncharacterized protein. (450 aa)
	OsI_11738	Uncharacterized protein. (408 aa)
	OsI_11741	Uncharacterized protein. (513 aa)
	OsI_12180	Uncharacterized protein. (99 aa)
	OsI_14127	Uncharacterized protein. (95 aa)
	OsI_15226	Uncharacterized protein. (450 aa)
	OsI_16066	Uncharacterized protein. (602 aa)
	OsI_16851	Uncharacterized protein. (511 aa)
	OsI_17116	Uncharacterized protein. (608 aa)
	OsI_19265	Uncharacterized protein. (793 aa)
	OsI_20195	Uncharacterized protein. (258 aa)
	OsI_21443	Uncharacterized protein. (535 aa)
	OsI_23091	Uncharacterized protein. (552 aa)
	OsI_23402	Uncharacterized protein. (619 aa)
	OsI_24261	Uncharacterized protein. (991 aa)
	OsI_24426	Uncharacterized protein. (478 aa)
	OsI_25524	Uncharacterized protein. (716 aa)
	OsI_27286	Uncharacterized protein. (551 aa)
	OsI_28108	Uncharacterized protein. (608 aa)
	OsI_28715	Uncharacterized protein. (621 aa)
	OsI_30376	Uncharacterized protein. (794 aa)
	OsI_30625	WD_REPEATS_REGION domain-containing protein. (990 aa)
	OsI_31319	Uncharacterized protein. (400 aa)
	OsI_31378	Uncharacterized protein. (618 aa)
	OsI_33042	Rhodanese domain-containing protein. (139 aa)
	OsI_33480	Uncharacterized protein. (459 aa)
	OsI_33787	Uncharacterized protein. (493 aa)
	OsI_36019	Uncharacterized protein. (186 aa)
	OsI_36997	Uncharacterized protein. (515 aa)
	OsI_37125	Uncharacterized protein. (697 aa)
	OsI_37500	Uncharacterized protein. (716 aa)
	OsI_38004	PPR_long domain-containing protein. (669 aa)
	OsI_38867	Uncharacterized protein. (914 aa)
	OsI_03217	Uncharacterized protein. (571 aa)
	OsI_03674	Uncharacterized protein. (593 aa)
	OsI_01278	Uncharacterized protein. (344 aa)
	OsI_00354	Uncharacterized protein. (259 aa)
	OsI_00356	Uncharacterized protein. (73 aa)
	OsI_08260	Uncharacterized protein. (595 aa)
	OsI_08267	Uncharacterized protein. (751 aa)
	OsI_07453	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (973 aa)
	OsI_11678	Uncharacterized protein. (473 aa)
	OsI_10529	Smr domain-containing protein. (397 aa)
	OsI_16525	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (710 aa)
	OsI_15455	Uncharacterized protein. (864 aa)
	OsI_15461	Uncharacterized protein. (548 aa)
	OsI_17016	Uncharacterized protein. (1198 aa)
	OsI_18509	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (762 aa)
	OsI_18532	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (469 aa)
	OsI_20368	Uncharacterized protein. (433 aa)
	OsI_23770	Uncharacterized protein. (275 aa)
	OsI_22777	Uncharacterized protein. (269 aa)
	OsI_24507	Rhodanese domain-containing protein. (170 aa)
	OsI_22045	Uncharacterized protein. (577 aa)
	OsI_25549	Uncharacterized protein. (478 aa)
	OsI_27214	PPR_long domain-containing protein. (347 aa)
	OsI_27404	Uncharacterized protein. (665 aa)
	OsI_24568	BHLH domain-containing protein. (1380 aa)
	OsI_26904	Uncharacterized protein. (346 aa)
	OsI_28232	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (437 aa)
	OsI_31569	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (650 aa)
	OsI_31242	Uncharacterized protein. (434 aa)
	OsI_34353	Uncharacterized protein. (124 aa)
	OsI_36980	DYW_deaminase domain-containing protein. (981 aa)
	OsI_39031	Uncharacterized protein. (1224 aa)
	OsI_37759	tRNA pseudouridine synthase. (391 aa)
	OsI_37186	DYW_deaminase domain-containing protein. (416 aa)
	OsI_04014	Drought-inducible protein 1OS. (434 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00353	OsI_03674	A2WKK0	B8A9G8	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00353	OsI_05773	A2WKK0	A2X0N7	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_00353	OsI_06436	A2WKK0	A2X2M0	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00353	OsI_25549	A2WKK0	B8B4T8	Uncharacterized protein.	Uncharacterized protein.	0.461
OsI_00353	OsI_31242	A2WKK0	B8BF32	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00353	OsI_34353	A2WKK0	B8BHW9	Uncharacterized protein.	Uncharacterized protein.	0.461
OsI_00353	OsI_37759	A2WKK0	B8BNJ9	Uncharacterized protein.	tRNA pseudouridine synthase.	0.483
OsI_00354	OsI_03674	B8AD78	B8A9G8	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00354	OsI_05773	B8AD78	A2X0N7	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_00354	OsI_06436	B8AD78	A2X2M0	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00354	OsI_25549	B8AD78	B8B4T8	Uncharacterized protein.	Uncharacterized protein.	0.461
OsI_00354	OsI_31242	B8AD78	B8BF32	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00354	OsI_34353	B8AD78	B8BHW9	Uncharacterized protein.	Uncharacterized protein.	0.461
OsI_00354	OsI_37759	B8AD78	B8BNJ9	Uncharacterized protein.	tRNA pseudouridine synthase.	0.483
OsI_00355	OsI_03674	A2WKK2	B8A9G8	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00355	OsI_05773	A2WKK2	A2X0N7	Uncharacterized protein.	Uncharacterized protein.	0.483
OsI_00355	OsI_06436	A2WKK2	A2X2M0	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00355	OsI_25549	A2WKK2	B8B4T8	Uncharacterized protein.	Uncharacterized protein.	0.461
OsI_00355	OsI_31242	A2WKK2	B8BF32	Uncharacterized protein.	Uncharacterized protein.	0.403
OsI_00355	OsI_34353	A2WKK2	B8BHW9	Uncharacterized protein.	Uncharacterized protein.	0.461

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