25 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_04687	Uncharacterized protein. (175 aa)
	OsI_12494	DEK_C domain-containing protein. (668 aa)
	OsI_13338	Uncharacterized protein. (382 aa)
	OsI_13369	Uncharacterized protein. (475 aa)
	OsI_17539	Uncharacterized protein. (1051 aa)
	OsI_19844	Uncharacterized protein. (1367 aa)
	OsI_29096	Uncharacterized protein. (469 aa)
	OsI_04995	DEK_C domain-containing protein. (509 aa)
	OsI_05224	Uncharacterized protein. (1298 aa)
	OsI_02356	Uncharacterized protein. (1226 aa)
	OsI_03975	Uncharacterized protein. (1270 aa)
	OsI_07656	Uncharacterized protein. (643 aa)
	OsI_08141	Uncharacterized protein. (745 aa)
	OsI_05562	Uncharacterized protein. (2184 aa)
	OsI_09041	Uncharacterized protein. (952 aa)
	OsI_12026	DEK_C domain-containing protein. (642 aa)
	OsI_09617	Uncharacterized protein. (661 aa)
	OsI_18056	Helicase C-terminal domain-containing protein. (332 aa)
	OsI_16003	Uncharacterized protein. (618 aa)
	OsI_22411	Uncharacterized protein. (949 aa)
	OsI_27196	Uncharacterized protein. (1734 aa)
	OsI_27432	Uncharacterized protein. (1770 aa)
	OsI_28396	Uncharacterized protein. (848 aa)
	OsI_31541	Uncharacterized protein. (844 aa)
	OsI_33891	Helicase ATP-binding domain-containing protein. (1143 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_02356	OsI_03975	B8A9Z8	B8AAE9	Uncharacterized protein.	Uncharacterized protein.	0.698
OsI_02356	OsI_04995	B8A9Z8	B8A8G2	Uncharacterized protein.	DEK_C domain-containing protein.	0.676
OsI_02356	OsI_05224	B8A9Z8	B8A980	Uncharacterized protein.	Uncharacterized protein.	0.698
OsI_02356	OsI_08141	B8A9Z8	B8AFQ4	Uncharacterized protein.	Uncharacterized protein.	0.721
OsI_02356	OsI_09041	B8A9Z8	B8AIV4	Uncharacterized protein.	Uncharacterized protein.	0.688
OsI_02356	OsI_09617	B8A9Z8	B8AL05	Uncharacterized protein.	Uncharacterized protein.	0.833
OsI_02356	OsI_12026	B8A9Z8	B8AJR2	Uncharacterized protein.	DEK_C domain-containing protein.	0.676
OsI_02356	OsI_12494	B8A9Z8	A2XJ75	Uncharacterized protein.	DEK_C domain-containing protein.	0.676
OsI_02356	OsI_13338	B8A9Z8	A2XLI7	Uncharacterized protein.	Uncharacterized protein.	0.833
OsI_02356	OsI_13369	B8A9Z8	A2XLL6	Uncharacterized protein.	Uncharacterized protein.	0.833
OsI_02356	OsI_17539	B8A9Z8	A2XXW3	Uncharacterized protein.	Uncharacterized protein.	0.698
OsI_02356	OsI_18056	B8A9Z8	B8AS50	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.698
OsI_02356	OsI_19844	B8A9Z8	A2Y4B8	Uncharacterized protein.	Uncharacterized protein.	0.688
OsI_02356	OsI_22411	B8A9Z8	B8B0A7	Uncharacterized protein.	Uncharacterized protein.	0.688
OsI_02356	OsI_27196	B8A9Z8	B8B5J6	Uncharacterized protein.	Uncharacterized protein.	0.721
OsI_02356	OsI_27432	B8A9Z8	B8B6A6	Uncharacterized protein.	Uncharacterized protein.	0.688
OsI_02356	OsI_28396	B8A9Z8	B8B8S1	Uncharacterized protein.	Uncharacterized protein.	0.688
OsI_02356	OsI_29096	B8A9Z8	A2YUV0	Uncharacterized protein.	Uncharacterized protein.	0.833
OsI_02356	OsI_31541	B8A9Z8	B8BCF7	Uncharacterized protein.	Uncharacterized protein.	0.833
OsI_02356	OsI_33891	B8A9Z8	B8BH98	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.704

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