STRINGSTRING
OsI_03910 OsI_03910 OsI_05377 OsI_05377 OsI_10382 OsI_10382 TFIIAy TFIIAy OsI_18432 OsI_18432 OsI_18537 OsI_18537 OsI_19309 OsI_19309 CDKD-1 CDKD-1 OsI_28884 OsI_28884 OsI_31412 OsI_31412 OsI_32170 OsI_32170 OsI_32946 OsI_32946 OsI_33458 OsI_33458 OsI_03346 OsI_03346 OsI_05675 OsI_05675 OsI_10779 OsI_10779 OsI_09622 OsI_09622 OsI_14316 OsI_14316 OsI_10228 OsI_10228 OsI_13435 OsI_13435 OsI_17910 OsI_17910 OsI_17944 OsI_17944 OsI_16588 OsI_16588 OsI_18797 OsI_18797 OsI_20575 OsI_20575 OsI_21849 OsI_21849 OsI_26126 OsI_26126 OsI_28861 OsI_28861 OsI_31426 OsI_31426 OsI_34611 OsI_34611 OsI_37007 OsI_37007 OsI_36068 OsI_36068 OsI_37389 OsI_37389
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_03910TFIIF_beta domain-containing protein. (261 aa)
OsI_05377Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
OsI_10382Uncharacterized protein. (529 aa)
TFIIAyTranscription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity (By similarity). Protein involved in the resistance to X.oryzae; Belongs to the TFIIA subunit 2 family. (106 aa)
OsI_18432Helicase ATP-binding domain-containing protein. (734 aa)
OsI_18537SHS2_Rpb7-N domain-containing protein. (175 aa)
OsI_19309Uncharacterized protein. (394 aa)
CDKD-1Cyclin-dependent kinase D-1. (424 aa)
OsI_28884HTH TFE/IIEalpha-type domain-containing protein. (462 aa)
OsI_31412Uncharacterized protein. (962 aa)
OsI_32170TFIIB-type domain-containing protein. (312 aa)
OsI_32946Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
OsI_33458Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
OsI_03346Uncharacterized protein. (766 aa)
OsI_05675Uncharacterized protein. (261 aa)
OsI_10779Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (527 aa)
OsI_09622DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
OsI_14316Uncharacterized protein. (232 aa)
OsI_10228TFIIE beta domain-containing protein. (323 aa)
OsI_13435CYCLIN domain-containing protein; Belongs to the cyclin family. (330 aa)
OsI_17910Uncharacterized protein. (1162 aa)
OsI_17944RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (459 aa)
OsI_16588VWFA domain-containing protein. (509 aa)
OsI_18797Uncharacterized protein. (81 aa)
OsI_20575Uncharacterized protein. (259 aa)
OsI_21849MAT1 domain-containing protein. (195 aa)
OsI_26126Uncharacterized protein. (341 aa)
OsI_28861Uncharacterized protein. (625 aa)
OsI_31426Uncharacterized protein. (287 aa)
OsI_34611Uncharacterized protein. (199 aa)
OsI_37007Uncharacterized protein. (128 aa)
OsI_36068MAT1 domain-containing protein. (195 aa)
OsI_37389HTH TFE/IIEalpha-type domain-containing protein. (458 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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