STRINGSTRING
OsI_13424 OsI_13424 OsI_01135 OsI_01135 OsI_01136 OsI_01136 OsI_01139 OsI_01139 OsI_01140 OsI_01140 OsI_01141 OsI_01141 OsI_02369 OsI_02369 OsI_03008 OsI_03008 OsI_03887 OsI_03887 LSM3 LSM3 OsI_04616 OsI_04616 OsI_04736 OsI_04736 OsI_04749 OsI_04749 OsI_05586 OsI_05586 OsI_05643 OsI_05643 OsI_05937 OsI_05937 OsI_06832 OsI_06832 OsI_07409 OsI_07409 OsI_07612 OsI_07612 OsI_08170 OsI_08170 OsI_09397 OsI_09397 OsI_10162 OsI_10162 OsI_12837 OsI_12837 OsI_13293 OsI_13293 OsI_13876 OsI_13876 OsI_14290 OsI_14290 OsI_14480 OsI_14480 OsI_16479 OsI_16479 OsI_17764 OsI_17764 OsI_17989 OsI_17989 OsI_18397 OsI_18397 OsI_19893 OsI_19893 OsI_20763 OsI_20763 OsI_21555 OsI_21555 OsI_21774 OsI_21774 OsI_22801 OsI_22801 OsI_23258 OsI_23258 OsI_23538 OsI_23538 OsI_25466 OsI_25466 OsI_25526 OsI_25526 OsI_27604 OsI_27604 OsI_29374 OsI_29374 OsI_31373 OsI_31373 OsI_32595 OsI_32595 OsI_32598 OsI_32598 OsI_32603 OsI_32603 OsI_32610 OsI_32610 OsI_32639 OsI_32639 OsI_32684 OsI_32684 OsI_32707 OsI_32707 OsI_32709 OsI_32709 OsI_33543 OsI_33543 OsI_33613 OsI_33613 OsI_33615 OsI_33615 OsI_33618 OsI_33618 OsI_37156 OsI_37156 OsI_03538 OsI_03538 OsI_02679 OsI_02679 OsI_01132 OsI_01132 OsI_01133 OsI_01133 OsI_01143 OsI_01143 LSM4 LSM4 OsI_01455 OsI_01455 OsI_00099 OsI_00099 OsI_00586 OsI_00586 OsI_00766 OsI_00766 OsI_06346 OsI_06346 OsI_09350 OsI_09350 OsI_09281 OsI_09281 OsI_06571 OsI_06571 OsI_09509 OsI_09509 OsI_08218 OsI_08218 OsI_06835 OsI_06835 OsI_07223 OsI_07223 OsI_07364 OsI_07364 OsI_08979 OsI_08979 OsI_09184 OsI_09184 OsI_13472 OsI_13472 OsI_10835 OsI_10835 OsI_12293 OsI_12293 OsI_09623 OsI_09623 OsI_14012 OsI_14012 OsI_09977 OsI_09977 OsI_14228 OsI_14228 OsI_12833 OsI_12833 OsI_14380 OsI_14380 OsI_10088 OsI_10088 OsI_11548 OsI_11548 OsI_16671 OsI_16671 OsI_16692 OsI_16692 OsI_16738 OsI_16738 OsI_15663 OsI_15663 OsI_16007 OsI_16007 LSM1 LSM1 OsI_19459 OsI_19459 OsI_19840 OsI_19840 LSM5 LSM5 OsI_20399 OsI_20399 OsI_20400 OsI_20400 OsI_23076 OsI_23076 OsI_23535 OsI_23535 OsI_23642 OsI_23642 OsI_26082 OsI_26082 OsI_26176 OsI_26176 OsI_25049 OsI_25049 OsI_25462 OsI_25462 OsI_28722 OsI_28722 OsI_27536 OsI_27536 OsI_27848 OsI_27848 OsI_30553 OsI_30553 OsI_32600 OsI_32600 OsI_32605 OsI_32605 OsI_32685 OsI_32685 OsI_32687 OsI_32687 OsI_32688 OsI_32688 OsI_32689 OsI_32689 OsI_32708 OsI_32708 OsI_32947 OsI_32947 OsI_32948 OsI_32948 OsI_33614 OsI_33614 OsI_33617 OsI_33617 OsI_33620 OsI_33620 OsI_33622 OsI_33622 OsI_33743 OsI_33743 OsI_34556 OsI_34556 OsI_34610 OsI_34610 OsI_35166 OsI_35166 OsI_35184 OsI_35184 OsI_35758 OsI_35758 OsI_35924 OsI_35924 OsI_37531 OsI_37531 OsI_37142 OsI_37142 OsI_38020 OsI_38020 OsI_38058 OsI_38058
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
OsI_13424NOT2_3_5 domain-containing protein. (625 aa)
OsI_01135DUF1618 domain-containing protein. (386 aa)
OsI_01136DUF1618 domain-containing protein. (388 aa)
OsI_01139DUF1618 domain-containing protein. (373 aa)
OsI_01140DUF1618 domain-containing protein. (357 aa)
OsI_01141DUF1618 domain-containing protein. (382 aa)
OsI_02369Uncharacterized protein; Belongs to the DEAD box helicase family. (792 aa)
OsI_03008Uncharacterized protein; Belongs to the DEAD box helicase family. (359 aa)
OsI_03887PAT1 domain-containing protein. (827 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
OsI_046165'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1068 aa)
OsI_04736Uncharacterized protein. (197 aa)
OsI_04749KH_dom_type_1 domain-containing protein. (239 aa)
OsI_05586RPOL4c domain-containing protein. (142 aa)
OsI_05643Uncharacterized protein. (597 aa)
OsI_05937Uncharacterized protein. (1290 aa)
OsI_06832PAT1 domain-containing protein. (898 aa)
OsI_07409Uncharacterized protein. (825 aa)
OsI_07612Uncharacterized protein. (408 aa)
OsI_08170Uncharacterized protein. (1190 aa)
OsI_09397NTP_transf_9 domain-containing protein. (131 aa)
OsI_10162Uncharacterized protein. (607 aa)
OsI_12837Uncharacterized protein. (853 aa)
OsI_13293Uncharacterized protein. (329 aa)
OsI_138765'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (997 aa)
OsI_14290Uncharacterized protein. (260 aa)
OsI_14480Uncharacterized protein. (148 aa)
OsI_16479Uncharacterized protein. (476 aa)
OsI_17764Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (378 aa)
OsI_17989Uncharacterized protein. (329 aa)
OsI_18397RRM domain-containing protein. (195 aa)
OsI_19893Uncharacterized protein. (177 aa)
OsI_20763Btz domain-containing protein. (708 aa)
OsI_21555Uncharacterized protein. (335 aa)
OsI_21774DUF1618 domain-containing protein. (604 aa)
OsI_22801Uncharacterized protein. (267 aa)
OsI_23258Uncharacterized protein. (273 aa)
OsI_23538Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (669 aa)
OsI_25466XRN_N domain-containing protein. (205 aa)
OsI_25526WH1 domain-containing protein. (382 aa)
OsI_27604Uncharacterized protein. (262 aa)
OsI_29374Uncharacterized protein. (244 aa)
OsI_31373Uncharacterized protein. (280 aa)
OsI_32595Uncharacterized protein. (337 aa)
OsI_32598F-box domain-containing protein. (429 aa)
OsI_32603Uncharacterized protein. (274 aa)
OsI_32610Uncharacterized protein. (301 aa)
OsI_32639Uncharacterized protein. (292 aa)
OsI_32684F-box domain-containing protein. (385 aa)
OsI_32707F-box domain-containing protein. (265 aa)
OsI_32709F-box domain-containing protein. (437 aa)
OsI_33543Endo/exonuclease/phosphatase domain-containing protein. (563 aa)
OsI_33613Uncharacterized protein. (647 aa)
OsI_33615Uncharacterized protein. (656 aa)
OsI_33618Uncharacterized protein. (738 aa)
OsI_37156Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (233 aa)
OsI_03538Btz domain-containing protein. (856 aa)
OsI_02679Btz domain-containing protein. (667 aa)
OsI_01132DUF1618 domain-containing protein. (502 aa)
OsI_01133DUF1618 domain-containing protein. (441 aa)
OsI_01143DUF1618 domain-containing protein. (515 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
OsI_01455Uncharacterized protein. (228 aa)
OsI_00099Uncharacterized protein. (621 aa)
OsI_00586Uncharacterized protein; Belongs to the DEAD box helicase family. (754 aa)
OsI_00766Uncharacterized protein; Belongs to the DEAD box helicase family. (470 aa)
OsI_06346Uncharacterized protein. (1382 aa)
OsI_09350Nudix hydrolase domain-containing protein. (321 aa)
OsI_09281Uncharacterized protein. (295 aa)
OsI_06571Uncharacterized protein. (475 aa)
OsI_09509Uncharacterized protein. (1145 aa)
OsI_08218Uncharacterized protein. (937 aa)
OsI_06835PAT1 domain-containing protein. (830 aa)
OsI_072235'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (790 aa)
OsI_07364Sm domain-containing protein. (97 aa)
OsI_08979DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1010 aa)
OsI_09184NOT2_3_5 domain-containing protein. (622 aa)
OsI_13472Uncharacterized protein. (136 aa)
OsI_10835Mago-bind domain-containing protein. (221 aa)
OsI_12293Uncharacterized protein; Belongs to the DEAD box helicase family. (404 aa)
OsI_09623Uncharacterized protein. (1799 aa)
OsI_14012RRM domain-containing protein. (214 aa)
OsI_09977Uncharacterized protein. (138 aa)
OsI_14228Uncharacterized protein. (492 aa)
OsI_12833Uncharacterized protein. (856 aa)
OsI_14380RNase_PH domain-containing protein. (238 aa)
OsI_10088HRDC domain-containing protein. (599 aa)
OsI_11548MIF4G domain-containing protein. (855 aa)
OsI_16671S1 domain-containing protein. (315 aa)
OsI_16692MIF4G domain-containing protein. (480 aa)
OsI_16738Uncharacterized protein. (905 aa)
OsI_15663Sm domain-containing protein. (97 aa)
OsI_16007Smg4_UPF3 domain-containing protein. (507 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (129 aa)
OsI_19459F-box domain-containing protein. (405 aa)
OsI_19840RAI1 domain-containing protein. (531 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
OsI_20399NOT2_3_5 domain-containing protein. (656 aa)
OsI_20400Uncharacterized protein. (174 aa)
OsI_23076Uncharacterized protein. (688 aa)
OsI_23535PABC domain-containing protein. (81 aa)
OsI_23642Uncharacterized protein. (96 aa)
OsI_26082Helicase ATP-binding domain-containing protein. (1277 aa)
OsI_26176HRDC domain-containing protein. (949 aa)
OsI_25049Uncharacterized protein. (363 aa)
OsI_25462XRN_N domain-containing protein. (188 aa)
OsI_28722Uncharacterized protein. (1014 aa)
OsI_27536Uncharacterized protein. (156 aa)
OsI_27848Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (120 aa)
OsI_30553Uncharacterized protein. (242 aa)
OsI_32600Uncharacterized protein. (184 aa)
OsI_32605Uncharacterized protein. (267 aa)
OsI_32685F-box domain-containing protein. (415 aa)
OsI_32687F-box domain-containing protein. (386 aa)
OsI_32688Uncharacterized protein. (238 aa)
OsI_32689F-box domain-containing protein. (391 aa)
OsI_32708Uncharacterized protein. (85 aa)
OsI_32947Uncharacterized protein. (195 aa)
OsI_32948Uncharacterized protein. (586 aa)
OsI_33614Uncharacterized protein. (86 aa)
OsI_33617Uncharacterized protein. (801 aa)
OsI_33620Uncharacterized protein. (683 aa)
OsI_33622Uncharacterized protein. (298 aa)
OsI_33743HRDC domain-containing protein. (854 aa)
OsI_34556TPR_REGION domain-containing protein. (1014 aa)
OsI_34610Uncharacterized protein. (2367 aa)
OsI_35166WH1 domain-containing protein. (332 aa)
OsI_351845'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (944 aa)
OsI_35758Uncharacterized protein. (150 aa)
OsI_35924Uncharacterized protein. (306 aa)
OsI_37531Uncharacterized protein. (374 aa)
OsI_37142Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
OsI_38020Uncharacterized protein. (160 aa)
OsI_38058Uncharacterized protein. (334 aa)
Your Current Organism:
Oryza sativa Indica
NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice
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