16 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_07612	Uncharacterized protein. (408 aa)
	OsI_14290	Uncharacterized protein. (260 aa)
	OsI_17764	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (378 aa)
	OsI_04616	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1068 aa)
	OsI_38058	Uncharacterized protein. (334 aa)
	OsI_35924	Uncharacterized protein. (306 aa)
	OsI_33743	HRDC domain-containing protein. (854 aa)
	OsI_30553	Uncharacterized protein. (242 aa)
	OsI_26176	HRDC domain-containing protein. (949 aa)
	OsI_10088	HRDC domain-containing protein. (599 aa)
	OsI_16671	S1 domain-containing protein. (315 aa)
	OsI_27604	Uncharacterized protein. (262 aa)
	OsI_09834	Uncharacterized protein; Belongs to the RNR ribonuclease family. (919 aa)
	OsI_04736	Uncharacterized protein. (197 aa)
	OsI_14380	RNase_PH domain-containing protein. (238 aa)
	OsI_04749	KH_dom_type_1 domain-containing protein. (239 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_04616	OsI_16671	A2WXG4	B8AS29	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	S1 domain-containing protein.	0.443
OsI_04616	OsI_26176	A2WXG4	B8B6L8	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	HRDC domain-containing protein.	0.458
OsI_04616	OsI_30553	A2WXG4	B8BDD9	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	Uncharacterized protein.	0.408
OsI_04736	OsI_07612	A2WXT4	A2X5Y3	Uncharacterized protein.	Uncharacterized protein.	0.993
OsI_04736	OsI_09834	A2WXT4	B8AMD6	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.972
OsI_04736	OsI_10088	A2WXT4	B8ANU3	Uncharacterized protein.	HRDC domain-containing protein.	0.967
OsI_04736	OsI_14290	A2WXT4	A2XNZ0	Uncharacterized protein.	Uncharacterized protein.	0.977
OsI_04736	OsI_14380	A2WXT4	B8ANR0	Uncharacterized protein.	RNase_PH domain-containing protein.	0.993
OsI_04736	OsI_16671	A2WXT4	B8AS29	Uncharacterized protein.	S1 domain-containing protein.	0.995
OsI_04736	OsI_26176	A2WXT4	B8B6L8	Uncharacterized protein.	HRDC domain-containing protein.	0.967
OsI_04736	OsI_27604	A2WXT4	A2YQN5	Uncharacterized protein.	Uncharacterized protein.	0.977
OsI_04736	OsI_30553	A2WXT4	B8BDD9	Uncharacterized protein.	Uncharacterized protein.	0.979
OsI_04736	OsI_33743	A2WXT4	B8BH23	Uncharacterized protein.	HRDC domain-containing protein.	0.967
OsI_04736	OsI_35924	A2WXT4	B8BK82	Uncharacterized protein.	Uncharacterized protein.	0.991
OsI_04736	OsI_38058	A2WXT4	B8BP86	Uncharacterized protein.	Uncharacterized protein.	0.991
OsI_04749	OsI_07612	A2WXU6	A2X5Y3	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.993
OsI_04749	OsI_09834	A2WXU6	B8AMD6	KH_dom_type_1 domain-containing protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.980
OsI_04749	OsI_10088	A2WXU6	B8ANU3	KH_dom_type_1 domain-containing protein.	HRDC domain-containing protein.	0.967
OsI_04749	OsI_14290	A2WXU6	A2XNZ0	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.977
OsI_04749	OsI_14380	A2WXU6	B8ANR0	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.993

page 1 of 10

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About