(48 nodes) Cytoplasmic microtubule organization network (Oryza sativa Indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_38349	Uncharacterized protein. (147 aa)
	OsI_38423	K-box domain-containing protein. (328 aa)
	OsI_39031	Uncharacterized protein. (1224 aa)
	OsI_38735	Uncharacterized protein. (132 aa)
	OsI_36752	Uncharacterized protein. (115 aa)
	OsI_36745	Uncharacterized protein. (115 aa)
	OsI_36627	Uncharacterized protein. (230 aa)
	OsI_34105	Uncharacterized protein. (121 aa)
	OsI_31569	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (650 aa)
	OsI_22208	C2 domain-containing protein. (2111 aa)
	OsI_19200	Thioredoxin domain-containing protein. (230 aa)
	OsI_20357	Uncharacterized protein. (590 aa)
	OsI_20119	Protein kinase domain-containing protein. (943 aa)
	OsI_18532	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (469 aa)
	OsI_18509	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (762 aa)
	OsI_18256	Uncharacterized protein. (604 aa)
	OsI_17016	Uncharacterized protein. (1198 aa)
	OsI_16568	Uncharacterized protein. (1443 aa)
	OsI_16525	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (710 aa)
	OsI_12058	Uncharacterized protein. (107 aa)
	OsI_07453	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (973 aa)
	OsI_07131	Uncharacterized protein. (129 aa)
	OsI_08085	Uncharacterized protein. (1435 aa)
	OsI_06548	Uncharacterized protein. (138 aa)
	OsI_09437	Uncharacterized protein. (1244 aa)
	OsI_00338	Uncharacterized protein. (600 aa)
	OsI_00185	MATH domain-containing protein. (296 aa)
	OsI_04220	Uncharacterized protein. (579 aa)
	OsI_01805	Uncharacterized protein. (871 aa)
	OsI_01590	Uncharacterized protein. (925 aa)
	OsI_38733	Uncharacterized protein. (50 aa)
	OsI_38426	Uncharacterized protein. (101 aa)
	OsI_38348	Uncharacterized protein. (181 aa)
	OsI_37921	Uncharacterized protein. (1040 aa)
	OsI_37920	Uncharacterized protein. (1121 aa)
	OsI_36524	Uncharacterized protein. (225 aa)
	OsI_30484	Uncharacterized protein. (290 aa)
	OsI_28095	Uncharacterized protein. (96 aa)
	OsI_20636	OVATE domain-containing protein. (316 aa)
	OsI_18398	Agenet domain-containing protein. (331 aa)
	OsI_17080	Uncharacterized protein. (127 aa)
	OsI_12705	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family. (126 aa)
	OsI_12060	Nap16kDa protein. (116 aa)
	OsI_06772	Uncharacterized protein. (231 aa)
	OsI_04323	Uncharacterized protein. (491 aa)
	OsI_03738	OVATE domain-containing protein. (324 aa)
	KATNA1	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. (519 aa)
	OsI_001009	Salt stress root protein RS1. (204 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNA1	OsI_18532	A2WTU5	B8AYG1	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.513
KATNA1	OsI_22208	A2WTU5	B8B4A6	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	C2 domain-containing protein.	0.416
OsI_001009	OsI_04323	A2WMG6	A2WWP8	Salt stress root protein RS1.	Uncharacterized protein.	0.448
OsI_001009	OsI_18256	A2WMG6	B8AXD2	Salt stress root protein RS1.	Uncharacterized protein.	0.440
OsI_001009	OsI_38733	A2WMG6	A2ZLN8	Salt stress root protein RS1.	Uncharacterized protein.	0.470
OsI_04323	OsI_001009	A2WWP8	A2WMG6	Uncharacterized protein.	Salt stress root protein RS1.	0.448
OsI_06548	OsI_07131	B8AEY1	B8AHH6	Uncharacterized protein.	Uncharacterized protein.	0.999
OsI_06548	OsI_12705	B8AEY1	A2XJT6	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.994
OsI_06548	OsI_34105	B8AEY1	B8BHL0	Uncharacterized protein.	Uncharacterized protein.	0.999
OsI_06548	OsI_36524	B8AEY1	A2ZFG8	Uncharacterized protein.	Uncharacterized protein.	0.997
OsI_06548	OsI_38348	B8AEY1	A2ZKK1	Uncharacterized protein.	Uncharacterized protein.	0.997
OsI_06548	OsI_38349	B8AEY1	A2ZKK2	Uncharacterized protein.	Uncharacterized protein.	0.997
OsI_06548	OsI_38733	B8AEY1	A2ZLN8	Uncharacterized protein.	Uncharacterized protein.	0.996
OsI_06548	OsI_38735	B8AEY1	B8BMI5	Uncharacterized protein.	Uncharacterized protein.	0.997
OsI_06772	OsI_38733	A2X3I3	A2ZLN8	Uncharacterized protein.	Uncharacterized protein.	0.456
OsI_07131	OsI_06548	B8AHH6	B8AEY1	Uncharacterized protein.	Uncharacterized protein.	0.999
OsI_07131	OsI_12705	B8AHH6	A2XJT6	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.995
OsI_07131	OsI_34105	B8AHH6	B8BHL0	Uncharacterized protein.	Uncharacterized protein.	0.998
OsI_07131	OsI_36524	B8AHH6	A2ZFG8	Uncharacterized protein.	Uncharacterized protein.	0.991
OsI_07131	OsI_38348	B8AHH6	A2ZKK1	Uncharacterized protein.	Uncharacterized protein.	0.991

page 1 of 7

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About