100 items (Oryza sativa Indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OsI_24330	Uncharacterized protein. (69 aa)
	OsI_02878	Exonuclease domain-containing protein. (304 aa)
	OsI_02979	NTP_transf_2 domain-containing protein. (127 aa)
	OsI_03421	PAP_central domain-containing protein. (129 aa)
	OsI_04736	Uncharacterized protein. (197 aa)
	OsI_04749	KH_dom_type_1 domain-containing protein. (239 aa)
	OsI_05586	RPOL4c domain-containing protein. (142 aa)
	OsI_05643	Uncharacterized protein. (597 aa)
	OsI_06362	Lactamase_B domain-containing protein. (302 aa)
	OsI_06439	Uncharacterized protein. (683 aa)
	OsI_07612	Uncharacterized protein. (408 aa)
	OsI_08435	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
	OsI_09490	Uncharacterized protein. (306 aa)
	OsI_13490	SUV3_C domain-containing protein. (155 aa)
	OsI_14290	Uncharacterized protein. (260 aa)
	OsI_14368	Uncharacterized protein. (700 aa)
	OsI_15711	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (542 aa)
	OsI_17062	Uncharacterized protein. (288 aa)
	OsI_18646	Uncharacterized protein. (269 aa)
	OsI_22384	RRM domain-containing protein. (213 aa)
	OsI_23369	Uncharacterized protein. (760 aa)
	OsI_24329	RRM domain-containing protein. (99 aa)
	OsI_25038	S1 motif domain-containing protein. (865 aa)
	OsI_27012	PUA domain-containing protein. (600 aa)
	OsI_27604	Uncharacterized protein. (262 aa)
	OsI_28072	CID domain-containing protein. (970 aa)
	OsI_29145	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (226 aa)
	OsI_29693	RRM domain-containing protein. (603 aa)
	OsI_31754	RRM domain-containing protein. (604 aa)
	OsI_31806	Lactamase_B domain-containing protein. (365 aa)
	OsI_36313	Exonuclease domain-containing protein. (192 aa)
	OsI_36315	Uncharacterized protein. (219 aa)
	OsI_37609	Uncharacterized protein. (214 aa)
	OsI_03224	Uncharacterized protein. (571 aa)
	OsI_04998	Uncharacterized protein. (410 aa)
	OsI_05213	WD_REPEATS_REGION domain-containing protein. (717 aa)
	OsI_01027	Uncharacterized protein. (945 aa)
	OsI_04417	Uncharacterized protein. (557 aa)
	OsI_04418	Uncharacterized protein. (381 aa)
	OsI_01406	Exonuclease domain-containing protein. (544 aa)
	OsI_00032	Uncharacterized protein. (717 aa)
	OsI_06378	Uncharacterized protein. (334 aa)
	OsI_06380	Uncharacterized protein; Belongs to the cytochrome P450 family. (434 aa)
	OsI_06415	PAP_central domain-containing protein. (608 aa)
	OsI_08089	S1 motif domain-containing protein. (1030 aa)
	OsI_08295	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (291 aa)
	OsI_09104	Uncharacterized protein. (71 aa)
	OsI_13485	Uncharacterized protein. (628 aa)
	OsI_10713	Beta-Casp domain-containing protein. (713 aa)
	OsI_13552	WD_REPEATS_REGION domain-containing protein. (434 aa)
	OsI_11043	Uncharacterized protein. (791 aa)
	OsI_09859	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (558 aa)
	OsI_11288	Uncharacterized protein. (519 aa)
	OsI_12902	Uncharacterized protein. (375 aa)
	OsI_14380	RNase_PH domain-containing protein. (238 aa)
	OsI_10088	HRDC domain-containing protein. (599 aa)
	OsI_11468	Uncharacterized protein. (860 aa)
	OsI_12928	Uncharacterized protein. (192 aa)
	OsI_11539	Uncharacterized protein. (123 aa)
	OsI_11747	PUA domain-containing protein. (563 aa)
	OsI_11751	PUA domain-containing protein. (535 aa)
	OsI_10487	NTP_transf_2 domain-containing protein. (1316 aa)
	OsI_15095	CPSF_A domain-containing protein. (1503 aa)
	OsI_17973	Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing. (202 aa)
	OsI_16671	S1 domain-containing protein. (315 aa)
	OsI_17161	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (556 aa)
	OsI_16163	SUV3_C domain-containing protein. (128 aa)
	OsI_16164	Uncharacterized protein. (465 aa)
	OsI_16243	Uncharacterized protein. (214 aa)
	OsI_18648	Uncharacterized protein. (121 aa)
	OsI_20603	CSTF_C domain-containing protein. (430 aa)
	OsI_22746	Uncharacterized protein. (748 aa)
	OsI_24054	Uncharacterized protein. (1254 aa)
	OsI_22899	Exonuclease domain-containing protein. (335 aa)
	OsI_22371	RRM domain-containing protein. (153 aa)
	OsI_27344	Uncharacterized protein. (1001 aa)
	OsI_27446	Uncharacterized protein. (1245 aa)
	OsI_27407	Uncharacterized protein. (455 aa)
	OsI_27409	Uncharacterized protein. (293 aa)
	OsI_26176	HRDC domain-containing protein. (949 aa)
	OsI_30272	Uncharacterized protein. (580 aa)
	OsI_30553	Uncharacterized protein. (242 aa)
	OsI_32043	Uncharacterized protein. (900 aa)
	OsI_32429	Uncharacterized protein. (963 aa)
	OsI_32459	Cleavage and polyadenylation specificity factor subunit 2. (1195 aa)
	OsI_32469	NTP_transf_2 domain-containing protein. (553 aa)
	OsI_32947	Uncharacterized protein. (195 aa)
	OsI_32948	Uncharacterized protein. (586 aa)
	OsI_33743	HRDC domain-containing protein. (854 aa)
	OsI_37050	PAP_central domain-containing protein. (248 aa)
	OsI_34858	PAP-associated domain-containing protein. (801 aa)
	OsI_35315	RRM domain-containing protein. (495 aa)
	OsI_35924	Uncharacterized protein. (306 aa)
	OsI_36554	Uncharacterized protein. (485 aa)
	OsI_38816	TPR_REGION domain-containing protein. (879 aa)
	OsI_37630	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (536 aa)
	OsI_37216	Uncharacterized protein. (112 aa)
	OsI_37983	Uncharacterized protein. (776 aa)
	OsI_37998	Uncharacterized protein. (989 aa)
	OsI_38058	Uncharacterized protein. (334 aa)

Your Current Organism:

Oryza sativa Indica

NCBI taxonomy Id: 39946
Other names: Indian rice, Indica rice, O. sativa Indica Group, Oryza sativa (indica cultivar-group), Oryza sativa (indica group), Oryza sativa Indica Group, Oryza sativa subsp. indica, Oryza sativa subsp. indica Kato, Oryza sp. Poi-6, long-grained rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OsI_00032	OsI_05586	B8ACS5	A2X046	Uncharacterized protein.	RPOL4c domain-containing protein.	0.951
OsI_00032	OsI_08435	B8ACS5	A2X876	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.716
OsI_00032	OsI_10713	B8ACS5	B8AK02	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.998
OsI_00032	OsI_11043	B8ACS5	B8ALH9	Uncharacterized protein.	Uncharacterized protein.	0.999
OsI_00032	OsI_13552	B8ACS5	B8AK84	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.467
OsI_00032	OsI_14368	B8ACS5	A2XP63	Uncharacterized protein.	Uncharacterized protein.	0.863
OsI_00032	OsI_28072	B8ACS5	A2YRX5	Uncharacterized protein.	CID domain-containing protein.	0.757
OsI_00032	OsI_32459	B8ACS5	B8BEN9	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.875
OsI_00032	OsI_37609	B8ACS5	A2ZIG1	Uncharacterized protein.	Uncharacterized protein.	0.751
OsI_01027	OsI_06362	B8AB13	A2X2E2	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.970
OsI_01027	OsI_08435	B8AB13	A2X876	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.437
OsI_01027	OsI_09859	B8AB13	B8AME4	Uncharacterized protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.487
OsI_01027	OsI_10088	B8AB13	B8ANU3	Uncharacterized protein.	HRDC domain-containing protein.	0.611
OsI_01027	OsI_10713	B8AB13	B8AK02	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.520
OsI_01027	OsI_13485	B8AB13	B8AJV2	Uncharacterized protein.	Uncharacterized protein.	0.552
OsI_01027	OsI_13490	B8AB13	A2XLY5	Uncharacterized protein.	SUV3_C domain-containing protein.	0.552
OsI_01027	OsI_14290	B8AB13	A2XNZ0	Uncharacterized protein.	Uncharacterized protein.	0.770
OsI_01027	OsI_14368	B8AB13	A2XP63	Uncharacterized protein.	Uncharacterized protein.	0.418
OsI_01027	OsI_14380	B8AB13	B8ANR0	Uncharacterized protein.	RNase_PH domain-containing protein.	0.770
OsI_01027	OsI_15711	B8AB13	A2XSX7	Uncharacterized protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.487

page 1 of 84

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About